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Gene: Tmem61 ENSMUSG00000085933

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Description

transmembrane protein 61 [Source:MGI Symbol;Acc:MGI:3041156]

Gene Synonyms

4732441L20Rik

Location

Chromosome 4: 106,356,010-106,397,743 reverse strand.

GRCm39:CM000997.3

About this gene

This gene has 6 transcripts (splice variants) and 105 orthologues.

Transcripts

Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	Flags
ENSMUST00000238833.2	Tmem61-202	990	197aa	ENSMUSP00000158903.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding		A0A5F8MPC2	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, GENCODE Primary represents a minimal set that contains MANE Select, MANE Plus Clinical and Ensembl Canonical transcripts and transcripts containing any conserved exons and common alternative splicing events (including exons skips) that are absent from the MANE and Ensembl Canonical transcripts for protein-coding genes. Other biotypes will have the GENCODE Primary flag added to the Ensembl Canonical transcript and for lncRNA genes only this will be the transcripts with the longest genomic span.GENCODE Primary, A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic, APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1,
ENSMUST00000239147.2	Tmem61-206	1165	209aa	ENSMUSP00000159035.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding		A0A5F8MQ20	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENSMUST00000148907.2	Tmem61-201	4006	135aa	ENSMUSP00000159005.2	Nonsense mediated decay		A0A5F8MPK5	TSL 2: A transcript where the best supporting mRNA is flagged as suspect or the support is from multiple ESTs The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:2,
ENSMUST00000239070.2	Tmem61-204	1385	123aa	ENSMUSP00000159161.2	Nonsense mediated decay		A0A5F8MPX5	-
ENSMUST00000239042.2	Tmem61-203	676	No protein	-	Alternatively spliced transcript of a protein coding gene for which we cannot define a CDS.Protein coding CDS not defined		-	-
ENSMUST00000239122.2	Tmem61-205	2487	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-

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Strains

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Genomic alignments

Gene tree

Orthologues

Paralogues (Not available)

Families (Not available)

More views of comparative genomics data, such as multiple alignments and synteny, are available on the Location page for this gene.

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Personal Data