Gene: 5430402O13Rik ENSMUSG00000085776

Description

RIKEN cDNA 5430402O13 gene [Source:MGI Symbol;Acc:MGI:1918631]

Location

Chromosome 6: 50,543,585-50,627,227 forward strand.

GRCm39:CM000999.3

About this gene

This gene has 40 transcripts (splice variants).

Transcripts

Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	Flags
ENSMUST00000379669.1	5430402O13Rik-208	545	No protein	-	lncRNA	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, GENCODE Primary represents a minimal set that contains MANE Select, MANE Plus Clinical and Ensembl Canonical transcripts and transcripts containing any conserved exons and common alternative splicing events (including exons skips) that are absent from the MANE and Ensembl Canonical transcripts for protein-coding genes. Other biotypes will have the GENCODE Primary flag added to the Ensembl Canonical transcript and for lncRNA genes only this will be the transcripts with the longest genomic span.GENCODE Primary,
ENSMUST00000241264.2	5430402O13Rik-203	2366	No protein	-	lncRNA	-
ENSMUST00000379670.1	5430402O13Rik-209	2294	No protein	-	lncRNA	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENSMUST00000243763.2	5430402O13Rik-204	1888	No protein	-	lncRNA	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENSMUST00000379687.1	5430402O13Rik-226	1265	No protein	-	lncRNA	-
ENSMUST00000379690.1	5430402O13Rik-229	1258	No protein	-	lncRNA	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENSMUST00000245069.2	5430402O13Rik-205	1205	No protein	-	lncRNA	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENSMUST00000379680.1	5430402O13Rik-219	1204	No protein	-	lncRNA	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENSMUST00000379672.1	5430402O13Rik-211	1161	No protein	-	lncRNA	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENSMUST00000379686.1	5430402O13Rik-225	1063	No protein	-	lncRNA	-
ENSMUST00000379682.1	5430402O13Rik-221	1058	No protein	-	lncRNA	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENSMUST00000126537.5	5430402O13Rik-201	1047	No protein	-	lncRNA	TSL 1: A transcript where all splice junctions are supported by at least one non-suspect mRNA. The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:1,
ENSMUST00000245554.2	5430402O13Rik-206	1038	No protein	-	lncRNA	-
ENSMUST00000379684.1	5430402O13Rik-223	1034	No protein	-	lncRNA	-
ENSMUST00000379673.1	5430402O13Rik-212	1032	No protein	-	lncRNA	-
ENSMUST00000379674.1	5430402O13Rik-213	1028	No protein	-	lncRNA	-
ENSMUST00000379679.1	5430402O13Rik-218	1013	No protein	-	lncRNA	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENSMUST00000379685.1	5430402O13Rik-224	1006	No protein	-	lncRNA	-
ENSMUST00000147260.10	5430402O13Rik-202	981	No protein	-	lncRNA	TSL 1: A transcript where all splice junctions are supported by at least one non-suspect mRNA. The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:1,
ENSMUST00000379681.1	5430402O13Rik-220	946	No protein	-	lncRNA	-
ENSMUST00000379691.1	5430402O13Rik-230	933	No protein	-	lncRNA	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENSMUST00000379692.1	5430402O13Rik-231	862	No protein	-	lncRNA	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENSMUST00000379671.1	5430402O13Rik-210	855	No protein	-	lncRNA	-
ENSMUST00000379694.1	5430402O13Rik-233	823	No protein	-	lncRNA	-
ENSMUST00000379699.1	5430402O13Rik-238	816	No protein	-	lncRNA	-
ENSMUST00000246019.2	5430402O13Rik-207	810	No protein	-	lncRNA	-
ENSMUST00000379697.1	5430402O13Rik-236	766	No protein	-	lncRNA	-
ENSMUST00000379701.1	5430402O13Rik-240	760	No protein	-	lncRNA	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENSMUST00000379677.1	5430402O13Rik-216	750	No protein	-	lncRNA	-
ENSMUST00000379689.1	5430402O13Rik-228	737	No protein	-	lncRNA	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENSMUST00000379688.1	5430402O13Rik-227	714	No protein	-	lncRNA	-
ENSMUST00000379698.1	5430402O13Rik-237	698	No protein	-	lncRNA	-
ENSMUST00000379683.1	5430402O13Rik-222	687	No protein	-	lncRNA	-
ENSMUST00000379700.1	5430402O13Rik-239	677	No protein	-	lncRNA	-
ENSMUST00000379675.1	5430402O13Rik-214	597	No protein	-	lncRNA	-
ENSMUST00000379696.1	5430402O13Rik-235	556	No protein	-	lncRNA	-
ENSMUST00000379695.1	5430402O13Rik-234	499	No protein	-	lncRNA	-
ENSMUST00000379678.1	5430402O13Rik-217	446	No protein	-	lncRNA	-
ENSMUST00000379693.1	5430402O13Rik-232	395	No protein	-	lncRNA	-
ENSMUST00000379676.1	5430402O13Rik-215	376	No protein	-	lncRNA	-