Summary
- Splice variants
- Transcript comparison
- Gene alleles
Sequence
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Comparative Genomics
- Genomic alignments
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- Gene gain/loss tree
- Orthologues
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Ontologies
- GO: Anatomical entity
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Gene: 3110056K07Rik ENSMUSG00000085622

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Description

RIKEN cDNA 3110056K07 gene [Source:MGI Symbol;Acc:MGI:1920454]

Location

Chromosome 12: 71,030,344-71,062,611 reverse strand.

GRCm39:CM001005.3

About this gene

This gene has 17 transcripts (splice variants).

Transcripts

Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	Flags
ENSMUST00000222159.2	3110056K07Rik-203	1790	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		TSL NA: A transcript that was not analysed for TSL. The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:NA,
ENSMUST00000269227.1	3110056K07Rik-204	1507	No protein	-	lncRNA		A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, GENCODE Primary represents a minimal set that contains MANE Select, MANE Plus Clinical and Ensembl Canonical transcripts and transcripts containing any conserved exons and common alternative splicing events (including exons skips) that are absent from the MANE and Ensembl Canonical transcripts for protein-coding genes. Other biotypes will have the GENCODE Primary flag added to the Ensembl Canonical transcript and for lncRNA genes only this will be the transcripts with the longest genomic span.GENCODE Primary, A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENSMUST00000269233.1	3110056K07Rik-210	1709	No protein	-	lncRNA		A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENSMUST00000136690.5	3110056K07Rik-202	1565	No protein	-	lncRNA		A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic, TSL 1: A transcript where all splice junctions are supported by at least one non-suspect mRNA. The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:1,
ENSMUST00000269237.1	3110056K07Rik-214	1355	No protein	-	lncRNA		-
ENSMUST00000269234.1	3110056K07Rik-211	1002	No protein	-	lncRNA		-
ENSMUST00000127129.9	3110056K07Rik-201	951	No protein	-	lncRNA		A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic, TSL 1: A transcript where all splice junctions are supported by at least one non-suspect mRNA. The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:1,
ENSMUST00000269236.1	3110056K07Rik-213	937	No protein	-	lncRNA		-
ENSMUST00000269232.1	3110056K07Rik-209	936	No protein	-	lncRNA		A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENSMUST00000269238.1	3110056K07Rik-215	855	No protein	-	lncRNA		A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENSMUST00000269239.1	3110056K07Rik-216	827	No protein	-	lncRNA		-
ENSMUST00000269235.1	3110056K07Rik-212	817	No protein	-	lncRNA		-
ENSMUST00000269229.1	3110056K07Rik-206	586	No protein	-	lncRNA		-
ENSMUST00000269231.1	3110056K07Rik-208	578	No protein	-	lncRNA		A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENSMUST00000269228.1	3110056K07Rik-205	576	No protein	-	lncRNA		A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENSMUST00000269240.1	3110056K07Rik-217	573	No protein	-	lncRNA		-
ENSMUST00000269230.1	3110056K07Rik-207	517	No protein	-	lncRNA		-

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Strains

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Genomic alignments

Gene tree (Not available)

Orthologues (Not available)

Paralogues (Not available)

Families (Not available)

More views of comparative genomics data, such as multiple alignments and synteny, are available on the Location page for this gene.

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Personal Data