Summary
- Splice variants
- Transcript comparison
- Gene alleles
Sequence
- Secondary Structure
Comparative Genomics
- Genomic alignments
- Gene tree
- Gene gain/loss tree
- Orthologues
- Paralogues
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  - Paralogues
Ontologies
- GO: Anatomical entity
Phenotypes
Genetic Variation
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Molecular interactions
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ID History
- Gene history

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Gene: 3110099E03Rik ENSMUSG00000085582

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Description

RIKEN cDNA 3110099E03 gene [Source:MGI Symbol;Acc:MGI:1925761]

Location

Chromosome 2: 115,323,994-115,412,561 reverse strand.

GRCm39:CM000995.3

About this gene

This gene has 18 transcripts (splice variants).

Transcripts

Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	Flags
ENSMUST00000332070.1	3110099E03Rik-205	978	No protein	-	lncRNA		A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, GENCODE Primary represents a minimal set that contains MANE Select, MANE Plus Clinical and Ensembl Canonical transcripts and transcripts containing any conserved exons and common alternative splicing events (including exons skips) that are absent from the MANE and Ensembl Canonical transcripts for protein-coding genes. Other biotypes will have the GENCODE Primary flag added to the Ensembl Canonical transcript and for lncRNA genes only this will be the transcripts with the longest genomic span.GENCODE Primary,
ENSMUST00000133648.2	3110099E03Rik-202	4049	No protein	-	lncRNA		A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic, TSL 5: A transcript where no single transcript supports the model structure. The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:5,
ENSMUST00000134580.3	3110099E03Rik-203	2707	No protein	-	lncRNA		TSL 1: A transcript where all splice junctions are supported by at least one non-suspect mRNA. The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:1,
ENSMUST00000332078.1	3110099E03Rik-213	1734	No protein	-	lncRNA		-
ENSMUST00000332073.1	3110099E03Rik-208	1649	No protein	-	lncRNA		-
ENSMUST00000332074.1	3110099E03Rik-209	1471	No protein	-	lncRNA		-
ENSMUST00000332075.1	3110099E03Rik-210	1429	No protein	-	lncRNA		-
ENSMUST00000332080.1	3110099E03Rik-215	1420	No protein	-	lncRNA		A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENSMUST00000143695.8	3110099E03Rik-204	1353	No protein	-	lncRNA		A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic, TSL 1: A transcript where all splice junctions are supported by at least one non-suspect mRNA. The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:1,
ENSMUST00000125147.3	3110099E03Rik-201	1341	No protein	-	lncRNA		TSL 3: A transcript where the only support is from a single EST The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:3,
ENSMUST00000332077.1	3110099E03Rik-212	1263	No protein	-	lncRNA		-
ENSMUST00000332079.1	3110099E03Rik-214	1199	No protein	-	lncRNA		-
ENSMUST00000332072.1	3110099E03Rik-207	1020	No protein	-	lncRNA		A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENSMUST00000332076.1	3110099E03Rik-211	970	No protein	-	lncRNA		-
ENSMUST00000332071.1	3110099E03Rik-206	826	No protein	-	lncRNA		-
ENSMUST00000332083.1	3110099E03Rik-218	734	No protein	-	lncRNA		-
ENSMUST00000332081.1	3110099E03Rik-216	644	No protein	-	lncRNA		-
ENSMUST00000332082.1	3110099E03Rik-217	427	No protein	-	lncRNA		-

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Strains

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Genomic alignments

Gene tree (Not available)

Orthologues (Not available)

Paralogues (Not available)

Families (Not available)

More views of comparative genomics data, such as multiple alignments and synteny, are available on the Location page for this gene.

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Personal Data