Summary
- Splice variants
- Transcript comparison
- Gene alleles
Sequence
- Secondary Structure
Comparative Genomics
- Genomic alignments
- Gene tree
- Gene gain/loss tree
- Orthologues
- Paralogues
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  - Paralogues
Ontologies
- GO: Anatomical entity
Phenotypes
Genetic Variation
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Molecular interactions
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ID History
- Gene history

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Gene: 1700046C09Rik ENSMUSG00000085561

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Description

RIKEN cDNA 1700046C09 gene [Source:MGI Symbol;Acc:MGI:1920557]

Location

Chromosome 11: 14,437,025-14,549,283 reverse strand.

GRCm39:CM001004.3

About this gene

This gene has 18 transcripts (splice variants).

Transcripts

Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	Flags
ENSMUST00000354595.1	1700046C09Rik-202	518	No protein	-	lncRNA		A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, GENCODE Primary represents a minimal set that contains MANE Select, MANE Plus Clinical and Ensembl Canonical transcripts and transcripts containing any conserved exons and common alternative splicing events (including exons skips) that are absent from the MANE and Ensembl Canonical transcripts for protein-coding genes. Other biotypes will have the GENCODE Primary flag added to the Ensembl Canonical transcript and for lncRNA genes only this will be the transcripts with the longest genomic span.GENCODE Primary,
ENSMUST00000354599.1	1700046C09Rik-206	1019	No protein	-	lncRNA		A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENSMUST00000354598.1	1700046C09Rik-205	954	No protein	-	lncRNA		-
ENSMUST00000354600.1	1700046C09Rik-207	934	No protein	-	lncRNA		-
ENSMUST00000354608.1	1700046C09Rik-215	781	No protein	-	lncRNA		A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENSMUST00000354609.1	1700046C09Rik-216	752	No protein	-	lncRNA		A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENSMUST00000354610.1	1700046C09Rik-217	675	No protein	-	lncRNA		-
ENSMUST00000354602.1	1700046C09Rik-209	670	No protein	-	lncRNA		-
ENSMUST00000354603.1	1700046C09Rik-210	653	No protein	-	lncRNA		-
ENSMUST00000354601.1	1700046C09Rik-208	646	No protein	-	lncRNA		A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENSMUST00000354606.1	1700046C09Rik-213	639	No protein	-	lncRNA		-
ENSMUST00000139973.3	1700046C09Rik-201	627	No protein	-	lncRNA		TSL 1: A transcript where all splice junctions are supported by at least one non-suspect mRNA. The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:1,
ENSMUST00000354611.1	1700046C09Rik-218	586	No protein	-	lncRNA		-
ENSMUST00000354607.1	1700046C09Rik-214	564	No protein	-	lncRNA		-
ENSMUST00000354596.1	1700046C09Rik-203	553	No protein	-	lncRNA		-
ENSMUST00000354597.1	1700046C09Rik-204	535	No protein	-	lncRNA		-
ENSMUST00000354604.1	1700046C09Rik-211	513	No protein	-	lncRNA		-
ENSMUST00000354605.1	1700046C09Rik-212	443	No protein	-	lncRNA		-

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Strains

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Genomic alignments

Gene tree (Not available)

Orthologues (Not available)

Paralogues (Not available)

Families (Not available)

More views of comparative genomics data, such as multiple alignments and synteny, are available on the Location page for this gene.

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Personal Data