Summary
- Splice variants
- Transcript comparison
- Gene alleles
Sequence
- Secondary Structure
Comparative Genomics
- Genomic alignments
- Gene tree
- Gene gain/loss tree
- Orthologues
- Paralogues
- Strains
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  - Orthologues
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Ontologies
- GO: Anatomical entity
Phenotypes
Genetic Variation
Gene expression
Pathway
Molecular interactions
Regulation
External references
Supporting evidence
ID History
- Gene history

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Gene: Gm12909 ENSMUSG00000085404

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Description

predicted gene 12909 [Source:MGI Symbol;Acc:MGI:3651135]

Location

Chromosome 4: 62,006,485-62,020,758 forward strand.

GRCm39:CM000997.3

About this gene

This gene has 15 transcripts (splice variants).

Transcripts

Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	Flags
ENSMUST00000267769.1	Gm12909-202	1329	No protein	-	lncRNA		A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, GENCODE Primary represents a minimal set that contains MANE Select, MANE Plus Clinical and Ensembl Canonical transcripts and transcripts containing any conserved exons and common alternative splicing events (including exons skips) that are absent from the MANE and Ensembl Canonical transcripts for protein-coding genes. Other biotypes will have the GENCODE Primary flag added to the Ensembl Canonical transcript and for lncRNA genes only this will be the transcripts with the longest genomic span.GENCODE Primary, A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENSMUST00000267774.1	Gm12909-207	1547	No protein	-	lncRNA		A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENSMUST00000267775.1	Gm12909-208	1544	No protein	-	lncRNA		-
ENSMUST00000267773.1	Gm12909-206	1492	No protein	-	lncRNA		A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENSMUST00000267770.1	Gm12909-203	1354	No protein	-	lncRNA		-
ENSMUST00000267771.1	Gm12909-204	1340	No protein	-	lncRNA		A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENSMUST00000267772.1	Gm12909-205	1332	No protein	-	lncRNA		-
ENSMUST00000267781.1	Gm12909-214	864	No protein	-	lncRNA		-
ENSMUST00000134190.3	Gm12909-201	852	No protein	-	lncRNA		A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic, TSL 2: A transcript where the best supporting mRNA is flagged as suspect or the support is from multiple ESTs The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:2,
ENSMUST00000267779.1	Gm12909-212	809	No protein	-	lncRNA		-
ENSMUST00000267780.1	Gm12909-213	783	No protein	-	lncRNA		-
ENSMUST00000267777.1	Gm12909-210	751	No protein	-	lncRNA		-
ENSMUST00000267778.1	Gm12909-211	745	No protein	-	lncRNA		-
ENSMUST00000267776.1	Gm12909-209	545	No protein	-	lncRNA		-
ENSMUST00000267782.1	Gm12909-215	328	No protein	-	lncRNA		-

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Strains

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Genomic alignments

Gene tree (Not available)

Orthologues (Not available)

Paralogues (Not available)

Families (Not available)

More views of comparative genomics data, such as multiple alignments and synteny, are available on the Location page for this gene.

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Personal Data