Summary
- Splice variants
- Transcript comparison
- Gene alleles
Sequence
- Secondary Structure
Comparative Genomics
- Genomic alignments
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Ontologies
- GO: Anatomical entity
Phenotypes
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ID History
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Gene: Gm12371 ENSMUSG00000084898

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Description

predicted gene 12371 [Source:MGI Symbol;Acc:MGI:3652322]

Location

Chromosome 4: 36,950,677-37,075,176 forward strand.

GRCm39:CM000997.3

About this gene

This gene has 16 transcripts (splice variants).

Transcripts

Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	Flags
ENSMUST00000308575.1	Gm12371-206	1910	No protein	-	lncRNA		A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, GENCODE Primary represents a minimal set that contains MANE Select, MANE Plus Clinical and Ensembl Canonical transcripts and transcripts containing any conserved exons and common alternative splicing events (including exons skips) that are absent from the MANE and Ensembl Canonical transcripts for protein-coding genes. Other biotypes will have the GENCODE Primary flag added to the Ensembl Canonical transcript and for lncRNA genes only this will be the transcripts with the longest genomic span.GENCODE Primary,
ENSMUST00000144029.4	Gm12371-201	2776	No protein	-	lncRNA		A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic, TSL 1: A transcript where all splice junctions are supported by at least one non-suspect mRNA. The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:1,
ENSMUST00000242428.2	Gm12371-204	2439	No protein	-	lncRNA		-
ENSMUST00000243761.2	Gm12371-205	1263	No protein	-	lncRNA		A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENSMUST00000242270.2	Gm12371-203	1248	No protein	-	lncRNA		A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENSMUST00000241099.2	Gm12371-202	1240	No protein	-	lncRNA		-
ENSMUST00000308585.1	Gm12371-216	1240	No protein	-	lncRNA		-
ENSMUST00000308580.1	Gm12371-211	1195	No protein	-	lncRNA		A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENSMUST00000308579.1	Gm12371-210	1137	No protein	-	lncRNA		-
ENSMUST00000308576.1	Gm12371-207	1097	No protein	-	lncRNA		-
ENSMUST00000308584.1	Gm12371-215	985	No protein	-	lncRNA		-
ENSMUST00000308577.1	Gm12371-208	848	No protein	-	lncRNA		A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENSMUST00000308581.1	Gm12371-212	796	No protein	-	lncRNA		A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENSMUST00000308583.1	Gm12371-214	784	No protein	-	lncRNA		-
ENSMUST00000308578.1	Gm12371-209	722	No protein	-	lncRNA		-
ENSMUST00000308582.1	Gm12371-213	688	No protein	-	lncRNA		-

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Strains

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Genomic alignments

Gene tree (Not available)

Orthologues (Not available)

Paralogues (Not available)

Families (Not available)

More views of comparative genomics data, such as multiple alignments and synteny, are available on the Location page for this gene.

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Personal Data