Summary
- Splice variants
- Transcript comparison
- Gene alleles
Sequence
- Secondary Structure
Comparative Genomics
- Genomic alignments
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- Orthologues
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Ontologies
- GO: Anatomical entity
Phenotypes
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Gene: 1700080N15Rik ENSMUSG00000084859

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Description

RIKEN cDNA 1700080N15 gene [Source:MGI Symbol;Acc:MGI:1920739]

Location

Chromosome 2: 4,136,871-4,146,016 reverse strand.

GRCm39:CM000995.3

About this gene

This gene has 18 transcripts (splice variants).

Transcripts

Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	Flags
ENSMUST00000155091.3	1700080N15Rik-203	501	No protein	-	lncRNA		A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, GENCODE Primary represents a minimal set that contains MANE Select, MANE Plus Clinical and Ensembl Canonical transcripts and transcripts containing any conserved exons and common alternative splicing events (including exons skips) that are absent from the MANE and Ensembl Canonical transcripts for protein-coding genes. Other biotypes will have the GENCODE Primary flag added to the Ensembl Canonical transcript and for lncRNA genes only this will be the transcripts with the longest genomic span.GENCODE Primary, TSL 1: A transcript where all splice junctions are supported by at least one non-suspect mRNA. The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:1,
ENSMUST00000154360.2	1700080N15Rik-202	1316	No protein	-	lncRNA		A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic, TSL 1: A transcript where all splice junctions are supported by at least one non-suspect mRNA. The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:1,
ENSMUST00000285671.1	1700080N15Rik-218	997	No protein	-	lncRNA		-
ENSMUST00000285670.1	1700080N15Rik-217	657	No protein	-	lncRNA		-
ENSMUST00000285657.1	1700080N15Rik-204	631	No protein	-	lncRNA		-
ENSMUST00000285665.1	1700080N15Rik-212	613	No protein	-	lncRNA		A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENSMUST00000285664.1	1700080N15Rik-211	588	No protein	-	lncRNA		A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENSMUST00000285659.1	1700080N15Rik-206	581	No protein	-	lncRNA		-
ENSMUST00000285669.1	1700080N15Rik-216	580	No protein	-	lncRNA		-
ENSMUST00000285663.1	1700080N15Rik-210	568	No protein	-	lncRNA		-
ENSMUST00000285668.1	1700080N15Rik-215	545	No protein	-	lncRNA		-
ENSMUST00000285661.1	1700080N15Rik-208	529	No protein	-	lncRNA		-
ENSMUST00000285666.1	1700080N15Rik-213	491	No protein	-	lncRNA		-
ENSMUST00000141488.9	1700080N15Rik-201	475	No protein	-	lncRNA		TSL 2: A transcript where the best supporting mRNA is flagged as suspect or the support is from multiple ESTs The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:2,
ENSMUST00000285667.1	1700080N15Rik-214	415	No protein	-	lncRNA		-
ENSMUST00000285662.1	1700080N15Rik-209	412	No protein	-	lncRNA		-
ENSMUST00000285658.1	1700080N15Rik-205	411	No protein	-	lncRNA		-
ENSMUST00000285660.1	1700080N15Rik-207	400	No protein	-	lncRNA		-

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Strains

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Genomic alignments

Gene tree (Not available)

Orthologues (Not available)

Paralogues (Not available)

Families (Not available)

More views of comparative genomics data, such as multiple alignments and synteny, are available on the Location page for this gene.

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Personal Data