Gene: Pou2af3 ENSMUSG00000079559

Description

POU class 2 homeobox associating factor 3 [Source:MGI Symbol;Acc:MGI:2685530]

Gene Synonyms

Colca2, Gm684, LOC270157, OCA-T2

Location

Chromosome 9: 51,181,558-51,190,951 reverse strand.

GRCm39:CM001002.3

About this gene

This gene has 3 transcripts (splice variants), 112 orthologues and is associated with 33 phenotypes.

Transcripts

Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	Flags
ENSMUST00000239415.2	Pou2af3-203	1124	253aa	ENSMUSP00000159303.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding		F8VPY8-1	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, GENCODE Primary represents a minimal set that contains MANE Select, MANE Plus Clinical and Ensembl Canonical transcripts and transcripts containing any conserved exons and common alternative splicing events (including exons skips) that are absent from the MANE and Ensembl Canonical transcripts for protein-coding genes. Other biotypes will have the GENCODE Primary flag added to the Ensembl Canonical transcript and for lncRNA genes only this will be the transcripts with the longest genomic span.GENCODE Primary, A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic, APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1,
ENSMUST00000114427.4	Pou2af3-201	1263	239aa	ENSMUSP00000110070.4	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS57676	F8VPY8-2	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic, TSL 3: A transcript where the only support is from a single EST The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:3,
ENSMUST00000215038.3	Pou2af3-202	1254	239aa	ENSMUSP00000150539.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS57676	F8VPY8-2	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic, TSL 5: A transcript where no single transcript supports the model structure. The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:5,