Gene: Kcnip3 ENSMUSG00000079056

Description

Kv channel interacting protein 3, calsenilin [Source:MGI Symbol;Acc:MGI:1929258]

Gene Synonyms

4933407H12Rik, Csen, DREAM, KChIP3, R74849

Location

Chromosome 2: 127,298,418-127,364,014 reverse strand.

GRCm39:CM000995.3

About this gene

This gene has 5 transcripts (splice variants), 274 orthologues, 14 paralogues and is associated with 16 phenotypes.

Transcripts

Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	Flags
ENSMUST00000088538.6	Kcnip3-202	1296	230aa	ENSMUSP00000085896.6	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS50703	Q3YAA9	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, GENCODE Primary represents a minimal set that contains MANE Select, MANE Plus Clinical and Ensembl Canonical transcripts and transcripts containing any conserved exons and common alternative splicing events (including exons skips) that are absent from the MANE and Ensembl Canonical transcripts for protein-coding genes. Other biotypes will have the GENCODE Primary flag added to the Ensembl Canonical transcript and for lncRNA genes only this will be the transcripts with the longest genomic span.GENCODE Primary, A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic, APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1, TSL 1: A transcript where all splice junctions are supported by at least one non-suspect mRNA. The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:1,
ENSMUST00000103215.11	Kcnip3-203	2732	256aa	ENSMUSP00000099504.5	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS16703	Q9QXT8-1	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic, TSL 1: A transcript where all splice junctions are supported by at least one non-suspect mRNA. The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:1,
ENSMUST00000028850.15	Kcnip3-201	2728	284aa	ENSMUSP00000028850.9	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS71139	A2AHT3	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic, TSL 1: A transcript where all splice junctions are supported by at least one non-suspect mRNA. The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:1,
ENSMUST00000249876.1	Kcnip3-205	1167	236aa	ENSMUSP00000159973.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		A0AAQ4VMS2	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENSMUST00000137625.2	Kcnip3-204	1172	No protein	-	Alternatively spliced transcript of a protein coding gene for which we cannot define a CDS.Protein coding CDS not defined		-	TSL 1: A transcript where all splice junctions are supported by at least one non-suspect mRNA. The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:1,

Strains

More views of comparative genomics data, such as multiple alignments and synteny, are available on the Location page for this gene.

Gene: Kcnip3 ENSMUSG00000079056

Strains

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Gene: Kcnip3 ENSMUSG00000079056

Strains

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