Summary
- Splice variants
- Transcript comparison
- Gene alleles
Sequence
- Secondary Structure
Comparative Genomics
Ontologies
- GO: Anatomical entity
Phenotypes
Genetic Variation
Gene expression
Pathway
Molecular interactions
Regulation
External references
Supporting evidence
ID History
- Gene history

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Gene: Efcab7 ENSMUSG00000073791

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Description

EF-hand calcium binding domain 7 [Source:MGI Symbol;Acc:MGI:2385199]

Location

Chromosome 4: 99,717,435-99,769,985 forward strand.

GRCm39:CM000997.3

About this gene

This gene has 7 transcripts (splice variants), 188 orthologues, 21 paralogues and is associated with 4 phenotypes.

Transcripts

Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	Flags
ENSMUST00000239516.1	Efcab7-202	2319	628aa	ENSMUSP00000159398.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding		Q8VDY4	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, GENCODE Primary represents a minimal set that contains MANE Select, MANE Plus Clinical and Ensembl Canonical transcripts and transcripts containing any conserved exons and common alternative splicing events (including exons skips) that are absent from the MANE and Ensembl Canonical transcripts for protein-coding genes. Other biotypes will have the GENCODE Primary flag added to the Ensembl Canonical transcript and for lncRNA genes only this will be the transcripts with the longest genomic span.GENCODE Primary, A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic, APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1,
ENSMUST00000136874.4	Efcab7-201	2121	628aa	ENSMUSP00000118989.4	Gene/transcipt that contains an open reading frame (ORF).Protein coding		A2CEK1 Q8VDY4	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic, APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1, TSL 2: A transcript where the best supporting mRNA is flagged as suspect or the support is from multiple ESTs The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:2,
ENSMUST00000239518.1	Efcab7-204	582	159aa	ENSMUSP00000159399.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding		A0A7N9VSQ5	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENSMUST00000239520.1	Efcab7-206	572	152aa	ENSMUSP00000159401.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding		A0A7N9VSU7	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENSMUST00000239519.1	Efcab7-205	1969	64aa	ENSMUSP00000159400.2	Nonsense mediated decay		A0A7N9VSH8	-
ENSMUST00000239521.1	Efcab7-207	809	64aa	ENSMUSP00000159402.2	Nonsense mediated decay		A0A7N9VSH8	-
ENSMUST00000239517.1	Efcab7-203	359	No protein	-	Alternatively spliced transcript of a protein coding gene for which we cannot define a CDS.Protein coding CDS not defined		-	-

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Strains

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Genomic alignments

Gene tree

Orthologues

Paralogues

Families (Not available)

More views of comparative genomics data, such as multiple alignments and synteny, are available on the Location page for this gene.

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Personal Data