Gene: 9330158H04Rik ENSMUSG00000073154

Description

RIKEN cDNA 9330158H04 gene [Source:MGI Symbol;Acc:MGI:2442094]

Location

Chromosome 6: 36,186,555-36,367,574 reverse strand.

GRCm39:CM000999.3

About this gene

This gene has 55 transcripts (splice variants) and 2 orthologues.

Transcripts

Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	Flags
ENSMUST00000101535.9	9330158H04Rik-201	3174	No protein	-	lncRNA	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, GENCODE Primary represents a minimal set that contains MANE Select, MANE Plus Clinical and Ensembl Canonical transcripts and transcripts containing any conserved exons and common alternative splicing events (including exons skips) that are absent from the MANE and Ensembl Canonical transcripts for protein-coding genes. Other biotypes will have the GENCODE Primary flag added to the Ensembl Canonical transcript and for lncRNA genes only this will be the transcripts with the longest genomic span.GENCODE Primary, A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic, TSL 1: A transcript where all splice junctions are supported by at least one non-suspect mRNA. The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:1,
ENSMUST00000161161.8	9330158H04Rik-206	3103	No protein	-	lncRNA	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic, TSL 1: A transcript where all splice junctions are supported by at least one non-suspect mRNA. The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:1,
ENSMUST00000300019.1	9330158H04Rik-224	2526	No protein	-	lncRNA	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENSMUST00000161820.8	9330158H04Rik-208	2324	No protein	-	lncRNA	TSL 1: A transcript where all splice junctions are supported by at least one non-suspect mRNA. The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:1,
ENSMUST00000300020.1	9330158H04Rik-225	2122	No protein	-	lncRNA	-
ENSMUST00000300031.1	9330158H04Rik-236	1787	No protein	-	lncRNA	-
ENSMUST00000160187.3	9330158H04Rik-205	1782	No protein	-	lncRNA	TSL 2: A transcript where the best supporting mRNA is flagged as suspect or the support is from multiple ESTs The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:2,
ENSMUST00000300008.1	9330158H04Rik-213	1625	No protein	-	lncRNA	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENSMUST00000160156.3	9330158H04Rik-204	1558	No protein	-	lncRNA	TSL 1: A transcript where all splice junctions are supported by at least one non-suspect mRNA. The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:1,
ENSMUST00000300034.1	9330158H04Rik-239	1482	No protein	-	lncRNA	-
ENSMUST00000300022.1	9330158H04Rik-227	1462	No protein	-	lncRNA	-
ENSMUST00000300023.1	9330158H04Rik-228	1326	No protein	-	lncRNA	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENSMUST00000300027.1	9330158H04Rik-232	1275	No protein	-	lncRNA	-
ENSMUST00000300035.1	9330158H04Rik-240	1194	No protein	-	lncRNA	-
ENSMUST00000300011.1	9330158H04Rik-216	1172	No protein	-	lncRNA	-
ENSMUST00000300025.1	9330158H04Rik-230	1127	No protein	-	lncRNA	-
ENSMUST00000300009.1	9330158H04Rik-214	1113	No protein	-	lncRNA	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENSMUST00000300021.1	9330158H04Rik-226	1100	No protein	-	lncRNA	-
ENSMUST00000300014.1	9330158H04Rik-219	1070	No protein	-	lncRNA	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENSMUST00000300040.1	9330158H04Rik-245	1054	No protein	-	lncRNA	-
ENSMUST00000300036.1	9330158H04Rik-241	1017	No protein	-	lncRNA	-
ENSMUST00000241338.2	9330158H04Rik-210	1002	No protein	-	lncRNA	-
ENSMUST00000243453.2	9330158H04Rik-212	991	No protein	-	lncRNA	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENSMUST00000159032.4	9330158H04Rik-202	984	No protein	-	lncRNA	TSL 1: A transcript where all splice junctions are supported by at least one non-suspect mRNA. The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:1,
ENSMUST00000300024.1	9330158H04Rik-229	977	No protein	-	lncRNA	-
ENSMUST00000300012.1	9330158H04Rik-217	975	No protein	-	lncRNA	-
ENSMUST00000300013.1	9330158H04Rik-218	966	No protein	-	lncRNA	-
ENSMUST00000300044.1	9330158H04Rik-249	965	No protein	-	lncRNA	-
ENSMUST00000159965.3	9330158H04Rik-203	958	No protein	-	lncRNA	TSL 3: A transcript where the only support is from a single EST The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:3,
ENSMUST00000300010.1	9330158H04Rik-215	936	No protein	-	lncRNA	-
ENSMUST00000300033.1	9330158H04Rik-238	921	No protein	-	lncRNA	-
ENSMUST00000300015.1	9330158H04Rik-220	913	No protein	-	lncRNA	-
ENSMUST00000161255.3	9330158H04Rik-207	901	No protein	-	lncRNA	TSL 5: A transcript where no single transcript supports the model structure. The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:5,
ENSMUST00000300039.1	9330158H04Rik-244	878	No protein	-	lncRNA	-
ENSMUST00000300041.1	9330158H04Rik-246	873	No protein	-	lncRNA	-
ENSMUST00000300042.1	9330158H04Rik-247	850	No protein	-	lncRNA	-
ENSMUST00000300043.1	9330158H04Rik-248	849	No protein	-	lncRNA	-
ENSMUST00000300032.1	9330158H04Rik-237	836	No protein	-	lncRNA	-
ENSMUST00000300017.1	9330158H04Rik-222	822	No protein	-	lncRNA	-
ENSMUST00000300038.1	9330158H04Rik-243	809	No protein	-	lncRNA	-
ENSMUST00000300045.1	9330158H04Rik-250	779	No protein	-	lncRNA	-
ENSMUST00000300046.1	9330158H04Rik-251	719	No protein	-	lncRNA	-
ENSMUST00000300037.1	9330158H04Rik-242	714	No protein	-	lncRNA	-
ENSMUST00000300049.1	9330158H04Rik-254	686	No protein	-	lncRNA	-
ENSMUST00000300026.1	9330158H04Rik-231	641	No protein	-	lncRNA	-
ENSMUST00000300016.1	9330158H04Rik-221	640	No protein	-	lncRNA	-
ENSMUST00000300030.1	9330158H04Rik-235	619	No protein	-	lncRNA	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENSMUST00000241424.2	9330158H04Rik-211	610	No protein	-	lncRNA	-
ENSMUST00000300029.1	9330158H04Rik-234	604	No protein	-	lncRNA	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENSMUST00000300048.1	9330158H04Rik-253	549	No protein	-	lncRNA	-
ENSMUST00000300047.1	9330158H04Rik-252	545	No protein	-	lncRNA	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENSMUST00000300050.1	9330158H04Rik-255	536	No protein	-	lncRNA	-
ENSMUST00000300018.1	9330158H04Rik-223	529	No protein	-	lncRNA	-
ENSMUST00000300028.1	9330158H04Rik-233	485	No protein	-	lncRNA	-
ENSMUST00000163834.3	9330158H04Rik-209	414	No protein	-	lncRNA	TSL 5: A transcript where no single transcript supports the model structure. The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:5,