Gene: A530040E14Rik ENSMUSG00000072109

Description

RIKEN cDNA A530040E14 gene [Source:MGI Symbol;Acc:MGI:3612703]

Location

Chromosome 1: 85,080,984-85,254,067 forward strand.

GRCm39:CM000994.3

About this gene

This gene has 36 transcripts (splice variants).

Transcripts

Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	Flags
ENSMUST00000367008.1	A530040E14Rik-208	919	No protein	-	lncRNA	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, GENCODE Primary represents a minimal set that contains MANE Select, MANE Plus Clinical and Ensembl Canonical transcripts and transcripts containing any conserved exons and common alternative splicing events (including exons skips) that are absent from the MANE and Ensembl Canonical transcripts for protein-coding genes. Other biotypes will have the GENCODE Primary flag added to the Ensembl Canonical transcript and for lncRNA genes only this will be the transcripts with the longest genomic span.GENCODE Primary,
ENSMUST00000245761.1	A530040E14Rik-207	2174	No protein	-	lncRNA	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENSMUST00000162453.9	A530040E14Rik-206	2089	No protein	-	lncRNA	TSL 5: A transcript where no single transcript supports the model structure. The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:5,
ENSMUST00000162353.9	A530040E14Rik-205	2082	No protein	-	lncRNA	TSL 1: A transcript where all splice junctions are supported by at least one non-suspect mRNA. The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:1,
ENSMUST00000367016.1	A530040E14Rik-215	1862	No protein	-	lncRNA	-
ENSMUST00000367025.1	A530040E14Rik-224	1787	No protein	-	lncRNA	-
ENSMUST00000367013.1	A530040E14Rik-212	1603	No protein	-	lncRNA	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENSMUST00000367018.1	A530040E14Rik-217	1579	No protein	-	lncRNA	-
ENSMUST00000093501.10	A530040E14Rik-201	1515	No protein	-	lncRNA	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic, TSL 1: A transcript where all splice junctions are supported by at least one non-suspect mRNA. The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:1,
ENSMUST00000367035.1	A530040E14Rik-234	1462	No protein	-	lncRNA	-
ENSMUST00000367011.1	A530040E14Rik-210	1444	No protein	-	lncRNA	-
ENSMUST00000367012.1	A530040E14Rik-211	1400	No protein	-	lncRNA	-
ENSMUST00000161150.4	A530040E14Rik-203	1393	No protein	-	lncRNA	TSL 1: A transcript where all splice junctions are supported by at least one non-suspect mRNA. The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:1,
ENSMUST00000367024.1	A530040E14Rik-223	1371	No protein	-	lncRNA	-
ENSMUST00000367021.1	A530040E14Rik-220	1319	No protein	-	lncRNA	-
ENSMUST00000159087.8	A530040E14Rik-202	1248	No protein	-	lncRNA	TSL 1: A transcript where all splice junctions are supported by at least one non-suspect mRNA. The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:1,
ENSMUST00000367022.1	A530040E14Rik-221	1227	No protein	-	lncRNA	-
ENSMUST00000367015.1	A530040E14Rik-214	1221	No protein	-	lncRNA	-
ENSMUST00000367020.1	A530040E14Rik-219	1122	No protein	-	lncRNA	-
ENSMUST00000367034.1	A530040E14Rik-233	1057	No protein	-	lncRNA	-
ENSMUST00000367037.1	A530040E14Rik-236	1023	No protein	-	lncRNA	-
ENSMUST00000367009.1	A530040E14Rik-209	1013	No protein	-	lncRNA	-
ENSMUST00000367031.1	A530040E14Rik-230	1002	No protein	-	lncRNA	-
ENSMUST00000367030.1	A530040E14Rik-229	969	No protein	-	lncRNA	-
ENSMUST00000367027.1	A530040E14Rik-226	967	No protein	-	lncRNA	-
ENSMUST00000367029.1	A530040E14Rik-228	958	No protein	-	lncRNA	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENSMUST00000367026.1	A530040E14Rik-225	916	No protein	-	lncRNA	-
ENSMUST00000367033.1	A530040E14Rik-232	903	No protein	-	lncRNA	-
ENSMUST00000367028.1	A530040E14Rik-227	883	No protein	-	lncRNA	-
ENSMUST00000367017.1	A530040E14Rik-216	879	No protein	-	lncRNA	-
ENSMUST00000367014.1	A530040E14Rik-213	877	No protein	-	lncRNA	-
ENSMUST00000367036.1	A530040E14Rik-235	806	No protein	-	lncRNA	-
ENSMUST00000367032.1	A530040E14Rik-231	748	No protein	-	lncRNA	-
ENSMUST00000367023.1	A530040E14Rik-222	715	No protein	-	lncRNA	-
ENSMUST00000161666.8	A530040E14Rik-204	711	No protein	-	lncRNA	TSL 3: A transcript where the only support is from a single EST The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:3,
ENSMUST00000367019.1	A530040E14Rik-218	620	No protein	-	lncRNA	-