Summary
- Splice variants
- Transcript comparison
- Gene alleles
Sequence
- Secondary Structure
Comparative Genomics
Ontologies
- GO: Anatomical entity
Phenotypes
Genetic Variation
Gene expression
Pathway
Molecular interactions
Regulation
External references
Supporting evidence
ID History
- Gene history

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Gene: Klhdc3 ENSMUSG00000063576

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Description

kelch domain containing 3 [Source:MGI Symbol;Acc:MGI:2651568]

Gene Synonyms

1300011D16Rik, Peas

Location

Chromosome 17: 46,985,476-46,991,840 reverse strand.

GRCm39:CM001010.3

About this gene

This gene has 5 transcripts (splice variants), 206 orthologues and 10 paralogues.

Transcripts

Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	Flags
ENSMUST00000071841.7	Klhdc3-201	2100	382aa	ENSMUSP00000071743.6	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS28834	A0A0R4J0W0	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, GENCODE Primary represents a minimal set that contains MANE Select, MANE Plus Clinical and Ensembl Canonical transcripts and transcripts containing any conserved exons and common alternative splicing events (including exons skips) that are absent from the MANE and Ensembl Canonical transcripts for protein-coding genes. Other biotypes will have the GENCODE Primary flag added to the Ensembl Canonical transcript and for lncRNA genes only this will be the transcripts with the longest genomic span.GENCODE Primary, A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic, APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1, TSL 1: A transcript where all splice junctions are supported by at least one non-suspect mRNA. The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:1,
ENSMUST00000165007.9	Klhdc3-202	1954	382aa	ENSMUSP00000128271.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS28834	A0A0R4J0W0	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic, APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1, TSL 1: A transcript where all splice junctions are supported by at least one non-suspect mRNA. The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:1,
ENSMUST00000233733.2	Klhdc3-205	1854	373aa	ENSMUSP00000156682.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding		A0A3B2WB53	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENSMUST00000232776.2	Klhdc3-203	952	238aa	ENSMUSP00000156502.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding		A0A3B2WCF8	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENSMUST00000233524.2	Klhdc3-204	534	104aa	ENSMUSP00000156731.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding		A0A3B2WCW8	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,

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Strains

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Genomic alignments

Gene tree

Orthologues

Paralogues

Families (Not available)

More views of comparative genomics data, such as multiple alignments and synteny, are available on the Location page for this gene.

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Personal Data