Summary
- Splice variants
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Gene: A830035A12Rik ENSMUSG00000059706

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Description

RIKEN cDNA A830035A12 gene [Source:MGI Symbol;Acc:MGI:3045382]

Location

Chromosome 11: 107,402,226-107,439,199 reverse strand.

GRCm39:CM001004.3

About this gene

This gene has 19 transcripts (splice variants).

Transcripts

Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	Flags
ENSMUST00000338415.1	A830035A12Rik-203	632	No protein	-	lncRNA		A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, GENCODE Primary represents a minimal set that contains MANE Select, MANE Plus Clinical and Ensembl Canonical transcripts and transcripts containing any conserved exons and common alternative splicing events (including exons skips) that are absent from the MANE and Ensembl Canonical transcripts for protein-coding genes. Other biotypes will have the GENCODE Primary flag added to the Ensembl Canonical transcript and for lncRNA genes only this will be the transcripts with the longest genomic span.GENCODE Primary, A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENSMUST00000338425.1	A830035A12Rik-213	1165	No protein	-	lncRNA		-
ENSMUST00000147445.3	A830035A12Rik-201	916	No protein	-	lncRNA		A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic, TSL 1: A transcript where all splice junctions are supported by at least one non-suspect mRNA. The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:1,
ENSMUST00000338428.1	A830035A12Rik-216	887	No protein	-	lncRNA		A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENSMUST00000338422.1	A830035A12Rik-210	815	No protein	-	lncRNA		A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENSMUST00000338418.1	A830035A12Rik-206	749	No protein	-	lncRNA		-
ENSMUST00000338429.1	A830035A12Rik-217	742	No protein	-	lncRNA		-
ENSMUST00000338424.1	A830035A12Rik-212	731	No protein	-	lncRNA		-
ENSMUST00000338421.1	A830035A12Rik-209	725	No protein	-	lncRNA		A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENSMUST00000338427.1	A830035A12Rik-215	674	No protein	-	lncRNA		-
ENSMUST00000338420.1	A830035A12Rik-208	661	No protein	-	lncRNA		-
ENSMUST00000338430.1	A830035A12Rik-218	620	No protein	-	lncRNA		-
ENSMUST00000338423.1	A830035A12Rik-211	547	No protein	-	lncRNA		-
ENSMUST00000338426.1	A830035A12Rik-214	504	No protein	-	lncRNA		-
ENSMUST00000338431.1	A830035A12Rik-219	502	No protein	-	lncRNA		-
ENSMUST00000149428.2	A830035A12Rik-202	459	No protein	-	lncRNA		A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic, TSL 1: A transcript where all splice junctions are supported by at least one non-suspect mRNA. The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:1,
ENSMUST00000338416.1	A830035A12Rik-204	328	No protein	-	lncRNA		-
ENSMUST00000338417.1	A830035A12Rik-205	238	No protein	-	lncRNA		-
ENSMUST00000338419.1	A830035A12Rik-207	188	No protein	-	lncRNA		-

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Strains

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Genomic alignments

Gene tree (Not available)

Orthologues (Not available)

Paralogues (Not available)

Families (Not available)

More views of comparative genomics data, such as multiple alignments and synteny, are available on the Location page for this gene.

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Personal Data