Gene: Zfp516 ENSMUSG00000058881

Description

zinc finger protein 516 [Source:MGI Symbol;Acc:MGI:2443957]

Gene Synonyms

C330029B10Rik, Zfp26l

Location

Chromosome 18: 82,928,788-83,023,439 forward strand.

GRCm39:CM001011.3

About this gene

This gene has 7 transcripts (splice variants), 184 orthologues, 14 paralogues and is associated with 5 phenotypes.

Transcripts

Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	Flags
ENSMUST00000171238.8	Zfp516-202	7725	1157aa	ENSMUSP00000126629.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS29380	Q7TSH3	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, GENCODE Primary represents a minimal set that contains MANE Select, MANE Plus Clinical and Ensembl Canonical transcripts and transcripts containing any conserved exons and common alternative splicing events (including exons skips) that are absent from the MANE and Ensembl Canonical transcripts for protein-coding genes. Other biotypes will have the GENCODE Primary flag added to the Ensembl Canonical transcript and for lncRNA genes only this will be the transcripts with the longest genomic span.GENCODE Primary, A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic, APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1, TSL 5: A transcript where no single transcript supports the model structure. The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:5,
ENSMUST00000071233.7	Zfp516-201	7703	1157aa	ENSMUSP00000071216.7	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS29380	Q7TSH3	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic, APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1, TSL 5: A transcript where no single transcript supports the model structure. The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:5,
ENSMUST00000236468.2	Zfp516-205	924	194aa	ENSMUSP00000157810.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding		A0A494B9U1	5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete,
ENSMUST00000235793.2	Zfp516-203	765	93aa	ENSMUSP00000158540.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding		A0A494BBJ0	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENSMUST00000237340.2	Zfp516-207	427	46aa	ENSMUSP00000157867.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding		A0A494BA37	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENSMUST00000235902.2	Zfp516-204	370	43aa	ENSMUSP00000158105.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding		A0A494BAI9	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENSMUST00000236858.2	Zfp516-206	348	111aa	ENSMUSP00000157930.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding		A0A494BA46	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,

Strains

More views of comparative genomics data, such as multiple alignments and synteny, are available on the Location page for this gene.

Gene: Zfp516 ENSMUSG00000058881

Strains

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Gene: Zfp516 ENSMUSG00000058881

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