Gene: Cds2 ENSMUSG00000058793

Description

CDP-diacylglycerol synthase 2 [Source:MGI Symbol;Acc:MGI:1332236]

Gene Synonyms

5730450N06Rik, 5730460C18Rik, D2Wsu127e

Location

Chromosome 2: 132,105,068-132,153,970 forward strand.

GRCm39:CM000995.3

About this gene

This gene has 6 transcripts (splice variants), 202 orthologues, 1 paralogue and is associated with 7 phenotypes.

Transcripts

Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	Flags
ENSMUST00000103181.11	Cds2-202	8396	444aa	ENSMUSP00000099470.5	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS16772	Q99L43	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, GENCODE Primary represents a minimal set that contains MANE Select, MANE Plus Clinical and Ensembl Canonical transcripts and transcripts containing any conserved exons and common alternative splicing events (including exons skips) that are absent from the MANE and Ensembl Canonical transcripts for protein-coding genes. Other biotypes will have the GENCODE Primary flag added to the Ensembl Canonical transcript and for lncRNA genes only this will be the transcripts with the longest genomic span.GENCODE Primary, A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic, APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1, TSL 1: A transcript where all splice junctions are supported by at least one non-suspect mRNA. The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:1,
ENSMUST00000089461.11	Cds2-201	8073	427aa	ENSMUSP00000086886.5	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS71150	A2AMQ5	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic, TSL 1: A transcript where all splice junctions are supported by at least one non-suspect mRNA. The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:1,
ENSMUST00000110158.8	Cds2-203	1247	129aa	ENSMUSP00000105786.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS79850	Q6PBC0	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic, TSL 1: A transcript where all splice junctions are supported by at least one non-suspect mRNA. The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:1,
ENSMUST00000138194.2	Cds2-205	627	194aa	ENSMUSP00000121769.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding		F6S4G2	TSL 5: A transcript where no single transcript supports the model structure. The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:5, 5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete,
ENSMUST00000125060.2	Cds2-204	345	33aa	ENSMUSP00000135710.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding		H3BLA1	TSL 2: A transcript where the best supporting mRNA is flagged as suspect or the support is from multiple ESTs The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:2, 3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENSMUST00000147456.2	Cds2-206	499	56aa	ENSMUSP00000135497.2	Nonsense mediated decay		H3BKR7	TSL 3: A transcript where the only support is from a single EST The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:3,

Strains

More views of comparative genomics data, such as multiple alignments and synteny, are available on the Location page for this gene.

Gene: Cds2 ENSMUSG00000058793

Strains

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Gene: Cds2 ENSMUSG00000058793

Strains

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