Summary
- Splice variants
- Transcript comparison
- Gene alleles
Sequence
- Secondary Structure
Comparative Genomics
Ontologies
- GO: Anatomical entity
Phenotypes
Genetic Variation
Gene expression
Pathway
Molecular interactions
Regulation
External references
Supporting evidence
ID History
- Gene history

Configure this page

Export data

Share this page

Bookmark this page

.

Gene: Tmt1a ENSMUSG00000054619

.

Description

thiol methyltransferase 1A1 [Source:MGI Symbol;Acc:MGI:1916523]

Gene Synonyms

2210414H16Rik, 3300001H21Rik, Mettl7a, Mettl7a1

Location

Chromosome 15: 100,202,021-100,226,543 forward strand.

GRCm39:CM001008.3

About this gene

This gene has 8 transcripts (splice variants), 339 orthologues and 7 paralogues.

Transcripts

Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	Flags
ENSMUST00000067752.5	Tmt1a-201	1946	244aa	ENSMUSP00000065271.4	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS27833	Q8C6B0	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, GENCODE Primary represents a minimal set that contains MANE Select, MANE Plus Clinical and Ensembl Canonical transcripts and transcripts containing any conserved exons and common alternative splicing events (including exons skips) that are absent from the MANE and Ensembl Canonical transcripts for protein-coding genes. Other biotypes will have the GENCODE Primary flag added to the Ensembl Canonical transcript and for lncRNA genes only this will be the transcripts with the longest genomic span.GENCODE Primary, A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic, APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1, TSL 1: A transcript where all splice junctions are supported by at least one non-suspect mRNA. The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:1,
ENSMUST00000229588.2	Tmt1a-204	1001	200aa	ENSMUSP00000155112.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding		Q9D7S5	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENSMUST00000231166.2	Tmt1a-208	769	115aa	ENSMUSP00000154972.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding		A0A2R8VHC8	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENSMUST00000229217.2	Tmt1a-202	742	193aa	ENSMUSP00000155295.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding		A0A2R8VK72	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENSMUST00000230472.2	Tmt1a-207	674	191aa	ENSMUSP00000155621.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding		A0A2R8VI07	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENSMUST00000229574.2	Tmt1a-203	646	82aa	ENSMUSP00000155283.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding		A0A2R8VHP5	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENSMUST00000230252.2	Tmt1a-206	333	88aa	ENSMUSP00000155267.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding		A0A2R8VHN2	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENSMUST00000230018.2	Tmt1a-205	449	58aa	ENSMUSP00000155095.2	Nonsense mediated decay		A0A2R8VHH3	5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete,

.

Strains

.

Genomic alignments

Gene tree

Orthologues

Paralogues

Families (Not available)

More views of comparative genomics data, such as multiple alignments and synteny, are available on the Location page for this gene.

.

Personal Data