Gene: Ndst1 ENSMUSG00000054008

Description

N-deacetylase/N-sulfotransferase (heparan glucosaminyl) 1 [Source:MGI Symbol;Acc:MGI:104719]

Gene Synonyms

1200015G06Rik, Hsst, Ndst-1, b2b2230Clo, glucosaminyl N-deacetylase/N-sulfotransferase 1

Location

Chromosome 18: 60,817,566-60,881,722 reverse strand.

GRCm39:CM001011.3

About this gene

This gene has 6 transcripts (splice variants), 224 orthologues, 10 paralogues and is associated with 50 phenotypes.

Transcripts

Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	Flags
ENSMUST00000237783.2	Ndst1-205	6478	882aa	ENSMUSP00000158312.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS37834	Q3UHN9-1	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, GENCODE Primary represents a minimal set that contains MANE Select, MANE Plus Clinical and Ensembl Canonical transcripts and transcripts containing any conserved exons and common alternative splicing events (including exons skips) that are absent from the MANE and Ensembl Canonical transcripts for protein-coding genes. Other biotypes will have the GENCODE Primary flag added to the Ensembl Canonical transcript and for lncRNA genes only this will be the transcripts with the longest genomic span.GENCODE Primary, A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic, APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1,
ENSMUST00000169273.2	Ndst1-201	6070	882aa	ENSMUSP00000126623.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS37834	Q3UHN9-1	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic, APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1, TSL 1: A transcript where all splice junctions are supported by at least one non-suspect mRNA. The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:1,
ENSMUST00000235795.2	Ndst1-202	5262	185aa	ENSMUSP00000158439.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding		A0A494BBA6	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENSMUST00000237885.2	Ndst1-206	828	96aa	ENSMUSP00000157775.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding		A0A494B9V2	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENSMUST00000237070.2	Ndst1-203	697	64aa	ENSMUSP00000157852.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding		A0A494B9X7	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENSMUST00000237572.2	Ndst1-204	301	101aa	ENSMUSP00000157512.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding		A0A494B9A5	5' and 3' truncations in transcript evidence prevent annotation of the start and the end of the CDS.CDS 5' and 3' incomplete,