Gene: BC004004 ENSMUSG00000052712

Description

cDNA sequence BC004004 [Source:MGI Symbol;Acc:MGI:2136782]

Gene Synonyms

2400006G15Rik

Location

Chromosome 17: 29,487,762-29,533,039 forward strand.

GRCm39:CM001010.3

About this gene

This gene has 26 transcripts (splice variants), 195 orthologues and is associated with 11 phenotypes.

Transcripts

Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	Flags
ENSMUST00000064709.13	BC004004-201	2812	348aa	ENSMUSP00000066224.6	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS28594	Q99KU6	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, GENCODE Primary represents a minimal set that contains MANE Select, MANE Plus Clinical and Ensembl Canonical transcripts and transcripts containing any conserved exons and common alternative splicing events (including exons skips) that are absent from the MANE and Ensembl Canonical transcripts for protein-coding genes. Other biotypes will have the GENCODE Primary flag added to the Ensembl Canonical transcript and for lncRNA genes only this will be the transcripts with the longest genomic span.GENCODE Primary, A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic, APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1, TSL 1: A transcript where all splice junctions are supported by at least one non-suspect mRNA. The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:1,
ENSMUST00000234711.2	BC004004-215	13859	348aa	ENSMUSP00000157208.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS28594	Q99KU6	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic, APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1,
ENSMUST00000234377.2	BC004004-212	2756	387aa	ENSMUSP00000157214.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding		A0A3Q4EI31	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENSMUST00000234256.2	BC004004-210	1694	348aa	ENSMUSP00000157363.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS28594	Q99KU6	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic, APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1,
ENSMUST00000149405.4	BC004004-203	1435	348aa	ENSMUSP00000117309.3	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS28594	Q99KU6	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic, APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1, TSL 5: A transcript where no single transcript supports the model structure. The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:5,
ENSMUST00000234714.2	BC004004-216	1396	37aa	ENSMUSP00000157343.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding		A0A3Q4EGS0	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENSMUST00000234773.2	BC004004-217	1367	348aa	ENSMUSP00000157182.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS28594	Q99KU6	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic, APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1,
ENSMUST00000234326.2	BC004004-211	1312	331aa	ENSMUSP00000157211.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding		A0A3Q4L309	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENSMUST00000235023.2	BC004004-220	1285	348aa	ENSMUSP00000157274.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS28594	Q99KU6	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic, APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1,
ENSMUST00000235117.2	BC004004-226	1227	288aa	ENSMUSP00000157150.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding		A0A3Q4L2X7	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENSMUST00000120346.9	BC004004-202	1148	288aa	ENSMUSP00000113315.3	Gene/transcipt that contains an open reading frame (ORF).Protein coding		A0A3Q4L2X7	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic, TSL 5: A transcript where no single transcript supports the model structure. The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:5,
ENSMUST00000235038.2	BC004004-221	921	220aa	ENSMUSP00000157134.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding		A0A3Q4L2W7	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENSMUST00000235074.2	BC004004-224	814	96aa	ENSMUSP00000157090.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding		A0A3Q4EGP5	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENSMUST00000234845.2	BC004004-219	811	165aa	ENSMUSP00000157073.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding		A0A3Q4L2T6	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENSMUST00000234459.2	BC004004-213	804	110aa	ENSMUSP00000157083.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding		A0A3Q4EG92	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENSMUST00000235050.2	BC004004-223	773	72aa	ENSMUSP00000157372.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding		A0A3Q4L387	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENSMUST00000234234.2	BC004004-209	697	137aa	ENSMUSP00000157251.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding		A0A3Q4EGZ6	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENSMUST00000235040.2	BC004004-222	685	184aa	ENSMUSP00000157227.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding		A0A3Q4EI43	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENSMUST00000234631.2	BC004004-214	1745	99aa	ENSMUSP00000157108.2	Nonsense mediated decay		A0A3Q4EGQ4	-
ENSMUST00000234028.2	BC004004-207	1270	232aa	ENSMUSP00000157326.2	Nonsense mediated decay		A0A3Q4EH62	-
ENSMUST00000235114.2	BC004004-225	1073	95aa	ENSMUSP00000157339.2	Nonsense mediated decay		A0A3Q4EC87	-
ENSMUST00000234820.2	BC004004-218	940	95aa	ENSMUSP00000157262.2	Nonsense mediated decay		A0A3Q4EC87	-
ENSMUST00000234012.2	BC004004-206	930	95aa	ENSMUSP00000157314.2	Nonsense mediated decay		A0A3Q4EC87	-
ENSMUST00000234054.2	BC004004-208	477	No protein	-	Alternatively spliced transcript of a protein coding gene for which we cannot define a CDS.Protein coding CDS not defined		-	-
ENSMUST00000156215.9	BC004004-205	3230	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	TSL 1: A transcript where all splice junctions are supported by at least one non-suspect mRNA. The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:1,
ENSMUST00000150874.2	BC004004-204	652	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	TSL 1: A transcript where all splice junctions are supported by at least one non-suspect mRNA. The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:1,