Gene: 5330438D12Rik ENSMUSG00000052291

Description

RIKEN cDNA 5330438D12 gene [Source:MGI Symbol;Acc:MGI:3026931]

Location

Chromosome 10: 116,344,919-116,451,878 forward strand.

GRCm39:CM001003.3

About this gene

This gene has 64 transcripts (splice variants).

Transcripts

Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	Flags
ENSMUST00000336454.1	5330438D12Rik-206	579	No protein	-	lncRNA	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, GENCODE Primary represents a minimal set that contains MANE Select, MANE Plus Clinical and Ensembl Canonical transcripts and transcripts containing any conserved exons and common alternative splicing events (including exons skips) that are absent from the MANE and Ensembl Canonical transcripts for protein-coding genes. Other biotypes will have the GENCODE Primary flag added to the Ensembl Canonical transcript and for lncRNA genes only this will be the transcripts with the longest genomic span.GENCODE Primary, A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENSMUST00000218139.2	5330438D12Rik-201	2235	No protein	-	lncRNA	TSL NA: A transcript that was not analysed for TSL. The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:NA,
ENSMUST00000219273.4	5330438D12Rik-203	1064	No protein	-	lncRNA	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic, TSL 2: A transcript where the best supporting mRNA is flagged as suspect or the support is from multiple ESTs The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:2,
ENSMUST00000336492.1	5330438D12Rik-244	1030	No protein	-	lncRNA	-
ENSMUST00000336507.1	5330438D12Rik-259	828	No protein	-	lncRNA	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENSMUST00000336496.1	5330438D12Rik-248	776	No protein	-	lncRNA	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENSMUST00000336471.1	5330438D12Rik-223	718	No protein	-	lncRNA	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENSMUST00000336509.1	5330438D12Rik-261	697	No protein	-	lncRNA	-
ENSMUST00000336508.1	5330438D12Rik-260	687	No protein	-	lncRNA	-
ENSMUST00000220305.3	5330438D12Rik-204	680	No protein	-	lncRNA	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic, TSL 3: A transcript where the only support is from a single EST The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:3,
ENSMUST00000336505.1	5330438D12Rik-257	674	No protein	-	lncRNA	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENSMUST00000336487.1	5330438D12Rik-239	666	No protein	-	lncRNA	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENSMUST00000243274.2	5330438D12Rik-205	653	No protein	-	lncRNA	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENSMUST00000336469.1	5330438D12Rik-221	646	No protein	-	lncRNA	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENSMUST00000336491.1	5330438D12Rik-243	645	No protein	-	lncRNA	-
ENSMUST00000336464.1	5330438D12Rik-216	635	No protein	-	lncRNA	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENSMUST00000336495.1	5330438D12Rik-247	625	No protein	-	lncRNA	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENSMUST00000336510.1	5330438D12Rik-262	614	No protein	-	lncRNA	-
ENSMUST00000336466.1	5330438D12Rik-218	613	No protein	-	lncRNA	-
ENSMUST00000336504.1	5330438D12Rik-256	598	No protein	-	lncRNA	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENSMUST00000336478.1	5330438D12Rik-230	571	No protein	-	lncRNA	-
ENSMUST00000336494.1	5330438D12Rik-246	570	No protein	-	lncRNA	-
ENSMUST00000336470.1	5330438D12Rik-222	569	No protein	-	lncRNA	-
ENSMUST00000336467.1	5330438D12Rik-219	565	No protein	-	lncRNA	-
ENSMUST00000336483.1	5330438D12Rik-235	549	No protein	-	lncRNA	-
ENSMUST00000336485.1	5330438D12Rik-237	545	No protein	-	lncRNA	-
ENSMUST00000336506.1	5330438D12Rik-258	544	No protein	-	lncRNA	-
ENSMUST00000336488.1	5330438D12Rik-240	530	No protein	-	lncRNA	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENSMUST00000336502.1	5330438D12Rik-254	523	No protein	-	lncRNA	-
ENSMUST00000336503.1	5330438D12Rik-255	508	No protein	-	lncRNA	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENSMUST00000336473.1	5330438D12Rik-225	502	No protein	-	lncRNA	-
ENSMUST00000336468.1	5330438D12Rik-220	499	No protein	-	lncRNA	-
ENSMUST00000336498.1	5330438D12Rik-250	492	No protein	-	lncRNA	-
ENSMUST00000336463.1	5330438D12Rik-215	486	No protein	-	lncRNA	-
ENSMUST00000336474.1	5330438D12Rik-226	483	No protein	-	lncRNA	-
ENSMUST00000336465.1	5330438D12Rik-217	469	No protein	-	lncRNA	-
ENSMUST00000336457.1	5330438D12Rik-209	465	No protein	-	lncRNA	-
ENSMUST00000336499.1	5330438D12Rik-251	463	No protein	-	lncRNA	-
ENSMUST00000336458.1	5330438D12Rik-210	455	No protein	-	lncRNA	-
ENSMUST00000336511.1	5330438D12Rik-263	454	No protein	-	lncRNA	-
ENSMUST00000336461.1	5330438D12Rik-213	447	No protein	-	lncRNA	-
ENSMUST00000336493.1	5330438D12Rik-245	446	No protein	-	lncRNA	-
ENSMUST00000336484.1	5330438D12Rik-236	440	No protein	-	lncRNA	-
ENSMUST00000336459.1	5330438D12Rik-211	438	No protein	-	lncRNA	-
ENSMUST00000336476.1	5330438D12Rik-228	428	No protein	-	lncRNA	-
ENSMUST00000336456.1	5330438D12Rik-208	418	No protein	-	lncRNA	-
ENSMUST00000336477.1	5330438D12Rik-229	416	No protein	-	lncRNA	-
ENSMUST00000336512.1	5330438D12Rik-264	414	No protein	-	lncRNA	-
ENSMUST00000336462.1	5330438D12Rik-214	411	No protein	-	lncRNA	-
ENSMUST00000336486.1	5330438D12Rik-238	411	No protein	-	lncRNA	-
ENSMUST00000336480.1	5330438D12Rik-232	407	No protein	-	lncRNA	-
ENSMUST00000336455.1	5330438D12Rik-207	404	No protein	-	lncRNA	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENSMUST00000336482.1	5330438D12Rik-234	403	No protein	-	lncRNA	-
ENSMUST00000336460.1	5330438D12Rik-212	402	No protein	-	lncRNA	-
ENSMUST00000336490.1	5330438D12Rik-242	380	No protein	-	lncRNA	-
ENSMUST00000336489.1	5330438D12Rik-241	377	No protein	-	lncRNA	-
ENSMUST00000336501.1	5330438D12Rik-253	353	No protein	-	lncRNA	-
ENSMUST00000336500.1	5330438D12Rik-252	342	No protein	-	lncRNA	-
ENSMUST00000336472.1	5330438D12Rik-224	340	No protein	-	lncRNA	-
ENSMUST00000219210.3	5330438D12Rik-202	328	No protein	-	lncRNA	TSL 3: A transcript where the only support is from a single EST The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:3,
ENSMUST00000336497.1	5330438D12Rik-249	314	No protein	-	lncRNA	-
ENSMUST00000336475.1	5330438D12Rik-227	310	No protein	-	lncRNA	-
ENSMUST00000336481.1	5330438D12Rik-233	310	No protein	-	lncRNA	-
ENSMUST00000336479.1	5330438D12Rik-231	306	No protein	-	lncRNA	-