Gene: F730043M19Rik ENSMUSG00000052125

Description

RIKEN cDNA F730043M19 gene [Source:MGI Symbol;Acc:MGI:2443237]

Location

Chromosome 12: 33,161,708-33,197,623 reverse strand.

GRCm39:CM001005.3

About this gene

This gene has 41 transcripts (splice variants) and is associated with 5 phenotypes.

Transcripts

Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	Flags
ENSMUST00000245085.2	F730043M19Rik-211	1375	No protein	-	lncRNA	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, GENCODE Primary represents a minimal set that contains MANE Select, MANE Plus Clinical and Ensembl Canonical transcripts and transcripts containing any conserved exons and common alternative splicing events (including exons skips) that are absent from the MANE and Ensembl Canonical transcripts for protein-coding genes. Other biotypes will have the GENCODE Primary flag added to the Ensembl Canonical transcript and for lncRNA genes only this will be the transcripts with the longest genomic span.GENCODE Primary,
ENSMUST00000363787.1	F730043M19Rik-216	3811	No protein	-	lncRNA	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENSMUST00000148740.8	F730043M19Rik-204	3312	No protein	-	lncRNA	TSL 1: A transcript where all splice junctions are supported by at least one non-suspect mRNA. The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:1,
ENSMUST00000363788.1	F730043M19Rik-217	2857	No protein	-	lncRNA	-
ENSMUST00000243655.2	F730043M19Rik-210	2667	No protein	-	lncRNA	-
ENSMUST00000245552.1	F730043M19Rik-212	2287	No protein	-	lncRNA	-
ENSMUST00000242873.2	F730043M19Rik-209	2116	No protein	-	lncRNA	-
ENSMUST00000144109.3	F730043M19Rik-202	2059	No protein	-	lncRNA	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic, TSL 3: A transcript where the only support is from a single EST The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:3,
ENSMUST00000145769.8	F730043M19Rik-203	2010	No protein	-	lncRNA	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic, TSL 1: A transcript where all splice junctions are supported by at least one non-suspect mRNA. The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:1,
ENSMUST00000363795.1	F730043M19Rik-224	1994	No protein	-	lncRNA	-
ENSMUST00000363789.1	F730043M19Rik-218	1946	No protein	-	lncRNA	-
ENSMUST00000363794.1	F730043M19Rik-223	1793	No protein	-	lncRNA	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENSMUST00000363791.1	F730043M19Rik-220	1739	No protein	-	lncRNA	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENSMUST00000363790.1	F730043M19Rik-219	1729	No protein	-	lncRNA	-
ENSMUST00000363800.1	F730043M19Rik-229	1592	No protein	-	lncRNA	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENSMUST00000363792.1	F730043M19Rik-221	1559	No protein	-	lncRNA	-
ENSMUST00000140105.9	F730043M19Rik-201	1552	No protein	-	lncRNA	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic, TSL 1: A transcript where all splice junctions are supported by at least one non-suspect mRNA. The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:1,
ENSMUST00000363807.1	F730043M19Rik-236	1515	No protein	-	lncRNA	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENSMUST00000363802.1	F730043M19Rik-231	1451	No protein	-	lncRNA	-
ENSMUST00000242351.2	F730043M19Rik-208	1449	No protein	-	lncRNA	-
ENSMUST00000245556.2	F730043M19Rik-213	1442	No protein	-	lncRNA	-
ENSMUST00000363804.1	F730043M19Rik-233	1334	No protein	-	lncRNA	-
ENSMUST00000363803.1	F730043M19Rik-232	1329	No protein	-	lncRNA	-
ENSMUST00000363786.1	F730043M19Rik-215	1298	No protein	-	lncRNA	-
ENSMUST00000363801.1	F730043M19Rik-230	1238	No protein	-	lncRNA	-
ENSMUST00000363805.1	F730043M19Rik-234	1172	No protein	-	lncRNA	-
ENSMUST00000363799.1	F730043M19Rik-228	1114	No protein	-	lncRNA	-
ENSMUST00000363809.1	F730043M19Rik-238	1063	No protein	-	lncRNA	-
ENSMUST00000241999.1	F730043M19Rik-207	1020	No protein	-	lncRNA	-
ENSMUST00000363796.1	F730043M19Rik-225	1011	No protein	-	lncRNA	-
ENSMUST00000363793.1	F730043M19Rik-222	983	No protein	-	lncRNA	-
ENSMUST00000363810.1	F730043M19Rik-239	903	No protein	-	lncRNA	-
ENSMUST00000363808.1	F730043M19Rik-237	900	No protein	-	lncRNA	-
ENSMUST00000363785.1	F730043M19Rik-214	892	No protein	-	lncRNA	-
ENSMUST00000363797.1	F730043M19Rik-226	887	No protein	-	lncRNA	-
ENSMUST00000363798.1	F730043M19Rik-227	871	No protein	-	lncRNA	-
ENSMUST00000151637.9	F730043M19Rik-205	645	No protein	-	lncRNA	TSL 3: A transcript where the only support is from a single EST The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:3,
ENSMUST00000363811.1	F730043M19Rik-240	522	No protein	-	lncRNA	-
ENSMUST00000363806.1	F730043M19Rik-235	520	No protein	-	lncRNA	-
ENSMUST00000363812.1	F730043M19Rik-241	476	No protein	-	lncRNA	-
ENSMUST00000172344.2	F730043M19Rik-206	357	No protein	-	lncRNA	TSL 5: A transcript where no single transcript supports the model structure. The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:5,