Gene: Ccbe1 ENSMUSG00000046318

Description

collagen and calcium binding EGF domains 1 [Source:MGI Symbol;Acc:MGI:2445053]

Gene Synonyms

4933426F18Rik, 9430093N24Rik

Location

Chromosome 18: 66,178,373-66,435,812 reverse strand.

GRCm39:CM001011.3

About this gene

This gene has 7 transcripts (splice variants), 185 orthologues and is associated with 45 phenotypes.

Transcripts

Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	Flags
ENSMUST00000130300.3	Ccbe1-202	6572	408aa	ENSMUSP00000117636.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS29314	Q3MI99	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, GENCODE Primary represents a minimal set that contains MANE Select, MANE Plus Clinical and Ensembl Canonical transcripts and transcripts containing any conserved exons and common alternative splicing events (including exons skips) that are absent from the MANE and Ensembl Canonical transcripts for protein-coding genes. Other biotypes will have the GENCODE Primary flag added to the Ensembl Canonical transcript and for lncRNA genes only this will be the transcripts with the longest genomic span.GENCODE Primary, A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic, APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1, TSL 1: A transcript where all splice junctions are supported by at least one non-suspect mRNA. The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:1,
ENSMUST00000235872.2	Ccbe1-205	2137	114aa	ENSMUSP00000157925.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding		A0A494BA41	5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete,
ENSMUST00000236402.2	Ccbe1-206	1046	75aa	ENSMUSP00000157390.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding		A0A494B905	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENSMUST00000061103.14	Ccbe1-201	5304	408aa	ENSMUSP00000052011.8	Nonsense mediated decay	CCDS29314	Q3MI99	TSL 1: A transcript where all splice junctions are supported by at least one non-suspect mRNA. The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:1,
ENSMUST00000236848.2	Ccbe1-207	712	93aa	ENSMUSP00000157891.2	Nonsense mediated decay		A0A494BA47	-
ENSMUST00000151343.3	Ccbe1-204	1845	No protein	-	Alternatively spliced transcript of a protein coding gene for which we cannot define a CDS.Protein coding CDS not defined		-	TSL 1: A transcript where all splice junctions are supported by at least one non-suspect mRNA. The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:1,
ENSMUST00000146610.2	Ccbe1-203	3261	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	TSL 1: A transcript where all splice junctions are supported by at least one non-suspect mRNA. The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:1,