Summary
- Splice variants
- Transcript comparison
- Gene alleles
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Comparative Genomics
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- Orthologues
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Ontologies
- GO: Anatomical entity
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Gene: 9530080O11Rik ENSMUSG00000044125

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Description

RIKEN cDNA 9530080O11 gene [Source:MGI Symbol;Acc:MGI:2441751]

Location

Chromosome 4: 95,800,860-95,855,892 reverse strand.

GRCm39:CM000997.3

About this gene

This gene has 14 transcripts (splice variants).

Transcripts

Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	Flags
ENSMUST00000329113.1	9530080O11Rik-204	976	No protein	-	lncRNA		A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, GENCODE Primary represents a minimal set that contains MANE Select, MANE Plus Clinical and Ensembl Canonical transcripts and transcripts containing any conserved exons and common alternative splicing events (including exons skips) that are absent from the MANE and Ensembl Canonical transcripts for protein-coding genes. Other biotypes will have the GENCODE Primary flag added to the Ensembl Canonical transcript and for lncRNA genes only this will be the transcripts with the longest genomic span.GENCODE Primary, A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENSMUST00000137239.3	9530080O11Rik-201	2303	No protein	-	lncRNA		A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic, TSL 2: A transcript where the best supporting mRNA is flagged as suspect or the support is from multiple ESTs The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:2,
ENSMUST00000143332.4	9530080O11Rik-202	1257	No protein	-	lncRNA		TSL 2: A transcript where the best supporting mRNA is flagged as suspect or the support is from multiple ESTs The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:2,
ENSMUST00000329118.1	9530080O11Rik-209	1112	No protein	-	lncRNA		-
ENSMUST00000244686.2	9530080O11Rik-203	1076	No protein	-	lncRNA		-
ENSMUST00000329116.1	9530080O11Rik-207	833	No protein	-	lncRNA		-
ENSMUST00000329114.1	9530080O11Rik-205	810	No protein	-	lncRNA		-
ENSMUST00000329115.1	9530080O11Rik-206	799	No protein	-	lncRNA		A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENSMUST00000329123.1	9530080O11Rik-214	724	No protein	-	lncRNA		A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENSMUST00000329117.1	9530080O11Rik-208	691	No protein	-	lncRNA		-
ENSMUST00000329122.1	9530080O11Rik-213	682	No protein	-	lncRNA		-
ENSMUST00000329120.1	9530080O11Rik-211	547	No protein	-	lncRNA		A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENSMUST00000329121.1	9530080O11Rik-212	527	No protein	-	lncRNA		-
ENSMUST00000329119.1	9530080O11Rik-210	494	No protein	-	lncRNA		-

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Strains

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Genomic alignments

Gene tree (Not available)

Orthologues (Not available)

Paralogues (Not available)

Families (Not available)

More views of comparative genomics data, such as multiple alignments and synteny, are available on the Location page for this gene.

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Personal Data