Summary
- Splice variants
- Transcript comparison
- Gene alleles
Sequence
- Secondary Structure
Comparative Genomics
- Genomic alignments
- Gene tree
- Gene gain/loss tree
- Orthologues
- Paralogues
- Strains
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  - Orthologues
  - Paralogues
Ontologies
- GO: Anatomical entity
Phenotypes
Genetic Variation
Gene expression
Pathway
Molecular interactions
Regulation
External references
Supporting evidence
ID History
- Gene history

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Gene: 2900005J15Rik ENSMUSG00000043833

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Description

RIKEN cDNA 2900005J15 gene [Source:MGI Symbol;Acc:MGI:1914511]

Location

Chromosome 5: 25,305,084-25,315,117 forward strand.

GRCm39:CM000998.3

About this gene

This gene has 12 transcripts (splice variants) and 1 orthologue.

Transcripts

Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	Flags
ENSMUST00000128569.4	2900005J15Rik-201	2084	No protein	-	lncRNA		A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, GENCODE Primary represents a minimal set that contains MANE Select, MANE Plus Clinical and Ensembl Canonical transcripts and transcripts containing any conserved exons and common alternative splicing events (including exons skips) that are absent from the MANE and Ensembl Canonical transcripts for protein-coding genes. Other biotypes will have the GENCODE Primary flag added to the Ensembl Canonical transcript and for lncRNA genes only this will be the transcripts with the longest genomic span.GENCODE Primary, A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic, TSL 1: A transcript where all splice junctions are supported by at least one non-suspect mRNA. The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:1,
ENSMUST00000171190.4	2900005J15Rik-202	2173	No protein	-	lncRNA		TSL NA: A transcript that was not analysed for TSL. The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:NA,
ENSMUST00000380785.1	2900005J15Rik-206	2094	No protein	-	lncRNA		A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENSMUST00000380789.1	2900005J15Rik-210	1983	No protein	-	lncRNA		-
ENSMUST00000246929.1	2900005J15Rik-205	1660	No protein	-	lncRNA		-
ENSMUST00000380786.1	2900005J15Rik-207	1506	No protein	-	lncRNA		A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENSMUST00000245668.1	2900005J15Rik-204	1479	No protein	-	lncRNA		-
ENSMUST00000380788.1	2900005J15Rik-209	1316	No protein	-	lncRNA		-
ENSMUST00000244428.2	2900005J15Rik-203	1245	No protein	-	lncRNA		A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENSMUST00000380791.1	2900005J15Rik-212	1194	No protein	-	lncRNA		-
ENSMUST00000380790.1	2900005J15Rik-211	1180	No protein	-	lncRNA		-
ENSMUST00000380787.1	2900005J15Rik-208	1005	No protein	-	lncRNA		-

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Strains

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Genomic alignments

Gene tree

Orthologues

Paralogues (Not available)

Families (Not available)

More views of comparative genomics data, such as multiple alignments and synteny, are available on the Location page for this gene.

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Personal Data