Summary
- Splice variants
- Transcript comparison
- Gene alleles
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Comparative Genomics
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Ontologies
- GO: Anatomical entity
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Gene: 0610009L18Rik ENSMUSG00000043644

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Description

RIKEN cDNA 0610009L18 gene [Source:MGI Symbol;Acc:MGI:1914088]

Location

Chromosome 11: 120,239,083-120,242,043 forward strand.

GRCm39:CM001004.3

About this gene

This gene has 14 transcripts (splice variants).

Transcripts

Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	Flags
ENSMUST00000276176.1	0610009L18Rik-206	647	No protein	-	lncRNA		A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, GENCODE Primary represents a minimal set that contains MANE Select, MANE Plus Clinical and Ensembl Canonical transcripts and transcripts containing any conserved exons and common alternative splicing events (including exons skips) that are absent from the MANE and Ensembl Canonical transcripts for protein-coding genes. Other biotypes will have the GENCODE Primary flag added to the Ensembl Canonical transcript and for lncRNA genes only this will be the transcripts with the longest genomic span.GENCODE Primary, A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENSMUST00000276183.1	0610009L18Rik-213	1362	No protein	-	lncRNA		-
ENSMUST00000245501.2	0610009L18Rik-203	1037	No protein	-	lncRNA		-
ENSMUST00000246689.2	0610009L18Rik-204	819	No protein	-	lncRNA		A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENSMUST00000244460.2	0610009L18Rik-202	740	No protein	-	lncRNA		A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENSMUST00000276182.1	0610009L18Rik-212	731	No protein	-	lncRNA		A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENSMUST00000276181.1	0610009L18Rik-211	703	No protein	-	lncRNA		A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENSMUST00000276180.1	0610009L18Rik-210	680	No protein	-	lncRNA		A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENSMUST00000143813.4	0610009L18Rik-201	646	No protein	-	lncRNA		TSL 2: A transcript where the best supporting mRNA is flagged as suspect or the support is from multiple ESTs The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:2,
ENSMUST00000276184.1	0610009L18Rik-214	639	No protein	-	lncRNA		-
ENSMUST00000247577.2	0610009L18Rik-205	618	No protein	-	lncRNA		-
ENSMUST00000276177.1	0610009L18Rik-207	613	No protein	-	lncRNA		-
ENSMUST00000276178.1	0610009L18Rik-208	434	No protein	-	lncRNA		A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENSMUST00000276179.1	0610009L18Rik-209	316	No protein	-	lncRNA		-

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Strains

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Genomic alignments

Gene tree (Not available)

Orthologues (Not available)

Paralogues (Not available)

Families (Not available)

More views of comparative genomics data, such as multiple alignments and synteny, are available on the Location page for this gene.

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Personal Data