Gene: Zscan2 ENSMUSG00000038797

Description

zinc finger and SCAN domain containing 2 [Source:MGI Symbol;Acc:MGI:99176]

Gene Synonyms

Zfp-29, Zfp29

Location

Chromosome 7: 80,510,668-80,526,285 forward strand.

GRCm39:CM001000.3

About this gene

This gene has 5 transcripts (splice variants), 94 orthologues, 17 paralogues and is associated with 2 phenotypes.

Transcripts

Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	Flags
ENSMUST00000044115.9	Zscan2-201	2310	614aa	ENSMUSP00000042321.8	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS21399	Q07230	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, GENCODE Primary represents a minimal set that contains MANE Select, MANE Plus Clinical and Ensembl Canonical transcripts and transcripts containing any conserved exons and common alternative splicing events (including exons skips) that are absent from the MANE and Ensembl Canonical transcripts for protein-coding genes. Other biotypes will have the GENCODE Primary flag added to the Ensembl Canonical transcript and for lncRNA genes only this will be the transcripts with the longest genomic span.GENCODE Primary, A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic, APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1, TSL 1: A transcript where all splice junctions are supported by at least one non-suspect mRNA. The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:1,
ENSMUST00000147125.2	Zscan2-203	1582	452aa	ENSMUSP00000121143.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding		D3YTK9	TSL 1: A transcript where all splice junctions are supported by at least one non-suspect mRNA. The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:1, 3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENSMUST00000155128.3	Zscan2-204	939	188aa	ENSMUSP00000117886.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding		D3YW76	TSL 1: A transcript where all splice junctions are supported by at least one non-suspect mRNA. The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:1, 3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENSMUST00000132163.8	Zscan2-202	699	145aa	ENSMUSP00000118774.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding		D3YYN4	TSL 3: A transcript where the only support is from a single EST The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:3, 3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENSMUST00000205361.2	Zscan2-205	692	69aa	ENSMUSP00000146233.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding		A0A0U1RQ38	TSL 5: A transcript where no single transcript supports the model structure. The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:5, 3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,

Strains

More views of comparative genomics data, such as multiple alignments and synteny, are available on the Location page for this gene.

Gene: Zscan2 ENSMUSG00000038797

Strains

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Gene: Zscan2 ENSMUSG00000038797

Strains

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