Gene: Skic3 ENSMUSG00000033991

Description

SKI3 subunit of superkiller complex [Source:MGI Symbol;Acc:MGI:2679923]

Gene Synonyms

Ttc37

Location

Chromosome 13: 76,246,853-76,338,435 forward strand.

GRCm39:CM001006.3

About this gene

This gene has 10 transcripts (splice variants), 201 orthologues and is associated with 15 phenotypes.

Transcripts

Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	Flags
ENSMUST00000224386.2	Skic3-205	6976	1563aa	ENSMUSP00000153521.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS36735	F8VPK0	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, GENCODE Primary represents a minimal set that contains MANE Select, MANE Plus Clinical and Ensembl Canonical transcripts and transcripts containing any conserved exons and common alternative splicing events (including exons skips) that are absent from the MANE and Ensembl Canonical transcripts for protein-coding genes. Other biotypes will have the GENCODE Primary flag added to the Ensembl Canonical transcript and for lncRNA genes only this will be the transcripts with the longest genomic span.GENCODE Primary, A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic, APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1,
ENSMUST00000091466.4	Skic3-201	5381	1563aa	ENSMUSP00000089045.4	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS36735	F8VPK0	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic, APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1, TSL 5: A transcript where no single transcript supports the model structure. The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:5,
ENSMUST00000224790.2	Skic3-206	818	273aa	ENSMUSP00000153156.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding		A0A286YCU6	5' and 3' truncations in transcript evidence prevent annotation of the start and the end of the CDS.CDS 5' and 3' incomplete,
ENSMUST00000225147.2	Skic3-208	549	66aa	ENSMUSP00000153556.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding		A0A286YDT1	5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete,
ENSMUST00000225220.2	Skic3-209	674	117aa	ENSMUSP00000153309.2	Nonsense mediated decay		A0A286YD75	5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete,
ENSMUST00000223902.2	Skic3-203	2116	No protein	-	Alternatively spliced transcript of a protein coding gene for which we cannot define a CDS.Protein coding CDS not defined		-	-
ENSMUST00000225341.2	Skic3-210	3384	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-
ENSMUST00000224914.2	Skic3-207	1764	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-
ENSMUST00000224289.2	Skic3-204	781	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-
ENSMUST00000223635.2	Skic3-202	582	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-