Gene: Cx3cl1 ENSMUSG00000031778

Description

C-X3-C motif chemokine ligand 1 [Source:MGI Symbol;Acc:MGI:1097153]

Gene Synonyms

CX3C, D8Bwg0439e, Scyd1, fractalkine, neurotactin

Location

Chromosome 8: 95,498,637-95,509,055 forward strand.

GRCm39:CM001001.3

About this gene

This gene has 6 transcripts (splice variants), 84 orthologues, 21 paralogues and is associated with 13 phenotypes.

Transcripts

Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	Flags
ENSMUST00000034230.7	Cx3cl1-201	3315	395aa	ENSMUSP00000034230.6	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS22548	O35188	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, GENCODE Primary represents a minimal set that contains MANE Select, MANE Plus Clinical and Ensembl Canonical transcripts and transcripts containing any conserved exons and common alternative splicing events (including exons skips) that are absent from the MANE and Ensembl Canonical transcripts for protein-coding genes. Other biotypes will have the GENCODE Primary flag added to the Ensembl Canonical transcript and for lncRNA genes only this will be the transcripts with the longest genomic span.GENCODE Primary, A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic, APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1, TSL 1: A transcript where all splice junctions are supported by at least one non-suspect mRNA. The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:1,
ENSMUST00000211956.2	Cx3cl1-206	470	64aa	ENSMUSP00000148819.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding		A0A1D5RMK8	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic, TSL 2: A transcript where the best supporting mRNA is flagged as suspect or the support is from multiple ESTs The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:2,
ENSMUST00000211947.2	Cx3cl1-205	377	45aa	ENSMUSP00000148534.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding		A0A1D5RLW9	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic, TSL 5: A transcript where no single transcript supports the model structure. The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:5,
ENSMUST00000150307.2	Cx3cl1-203	780	57aa	ENSMUSP00000123538.2	Nonsense mediated decay		D6RCV0	TSL 3: A transcript where the only support is from a single EST The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:3,
ENSMUST00000135970.2	Cx3cl1-202	432	37aa	ENSMUSP00000117632.2	Nonsense mediated decay		E0CXC3	TSL 3: A transcript where the only support is from a single EST The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:3,
ENSMUST00000151783.9	Cx3cl1-204	462	No protein	-	Alternatively spliced transcript of a protein coding gene for which we cannot define a CDS.Protein coding CDS not defined		-	TSL 3: A transcript where the only support is from a single EST The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:3,

Strains

More views of comparative genomics data, such as multiple alignments and synteny, are available on the Location page for this gene.

Gene: Cx3cl1 ENSMUSG00000031778

Strains

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Gene: Cx3cl1 ENSMUSG00000031778

Strains

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