Gene: Ldhc ENSMUSG00000030851

Description

lactate dehydrogenase C [Source:MGI Symbol;Acc:MGI:96764]

Gene Synonyms

Ldh-3, Ldh3, Ldhc4

Location

Chromosome 7: 46,510,627-46,527,566 forward strand.

GRCm39:CM001000.3

About this gene

This gene has 5 transcripts (splice variants), 98 orthologues, 4 paralogues and is associated with 6 phenotypes.

Transcripts

Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	Flags
ENSMUST00000014545.11	Ldhc-201	1370	332aa	ENSMUSP00000014545.5	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS21290	P00342 Q548Z6	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, GENCODE Primary represents a minimal set that contains MANE Select, MANE Plus Clinical and Ensembl Canonical transcripts and transcripts containing any conserved exons and common alternative splicing events (including exons skips) that are absent from the MANE and Ensembl Canonical transcripts for protein-coding genes. Other biotypes will have the GENCODE Primary flag added to the Ensembl Canonical transcript and for lncRNA genes only this will be the transcripts with the longest genomic span.GENCODE Primary, A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic, APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1, TSL 1: A transcript where all splice junctions are supported by at least one non-suspect mRNA. The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:1,
ENSMUST00000210585.2	Ldhc-204	1071	274aa	ENSMUSP00000147492.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding		A0A1B0GRE9	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic, TSL 1: A transcript where all splice junctions are supported by at least one non-suspect mRNA. The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:1,
ENSMUST00000126004.3	Ldhc-202	872	236aa	ENSMUSP00000115652.3	Gene/transcipt that contains an open reading frame (ORF).Protein coding		D3YZE4	TSL 5: A transcript where no single transcript supports the model structure. The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:5, 3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENSMUST00000211784.2	Ldhc-205	829	171aa	ENSMUSP00000148038.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding		A0A1B0GSR2	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic, TSL 1: A transcript where all splice junctions are supported by at least one non-suspect mRNA. The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:1,
ENSMUST00000148565.8	Ldhc-203	767	235aa	ENSMUSP00000114206.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding		D3YVR7	TSL 3: A transcript where the only support is from a single EST The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:3, 3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,

Strains

More views of comparative genomics data, such as multiple alignments and synteny, are available on the Location page for this gene.

Gene: Ldhc ENSMUSG00000030851

Strains

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Gene: Ldhc ENSMUSG00000030851

Strains

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