Gene: Tmed2 ENSMUSG00000029390

Description

transmembrane p24 trafficking protein 2 [Source:MGI Symbol;Acc:MGI:1929269]

Gene Synonyms

1110032D12Rik, 1810020N21Rik, Sid394, p24beta1

Location

Chromosome 5: 124,678,758-124,688,569 forward strand.

GRCm39:CM000998.3

About this gene

This gene has 5 transcripts (splice variants), 224 orthologues, 10 paralogues and is associated with 18 phenotypes.

Transcripts

Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	Flags
ENSMUST00000060226.11	Tmed2-201	2074	201aa	ENSMUSP00000054834.5	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS19679	A2RS53 Q9R0Q3	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, GENCODE Primary represents a minimal set that contains MANE Select, MANE Plus Clinical and Ensembl Canonical transcripts and transcripts containing any conserved exons and common alternative splicing events (including exons skips) that are absent from the MANE and Ensembl Canonical transcripts for protein-coding genes. Other biotypes will have the GENCODE Primary flag added to the Ensembl Canonical transcript and for lncRNA genes only this will be the transcripts with the longest genomic span.GENCODE Primary, A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic, APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1, TSL 1: A transcript where all splice junctions are supported by at least one non-suspect mRNA. The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:1,
ENSMUST00000135464.2	Tmed2-203	1630	112aa	ENSMUSP00000120809.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding		Q8BPI2	TSL 1: A transcript where all splice junctions are supported by at least one non-suspect mRNA. The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:1, 5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete,
ENSMUST00000124529.8	Tmed2-202	735	176aa	ENSMUSP00000115169.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding		F6V6T4	TSL 2: A transcript where the best supporting mRNA is flagged as suspect or the support is from multiple ESTs The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:2, 5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete,
ENSMUST00000200031.2	Tmed2-205	455	55aa	ENSMUSP00000142701.2	Nonsense mediated decay		A0A0G2JEB1	TSL 5: A transcript where no single transcript supports the model structure. The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:5, 5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete,
ENSMUST00000197112.2	Tmed2-204	425	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	TSL NA: A transcript that was not analysed for TSL. The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:NA,

Strains

More views of comparative genomics data, such as multiple alignments and synteny, are available on the Location page for this gene.

Gene: Tmed2 ENSMUSG00000029390

Strains

About Us

Get help

Our sister sites

Follow us

Favourite species

All species

Recent locations

Gene: Tmed2 ENSMUSG00000029390

Strains

About Us

Get help

Our sister sites

Follow us