Gene: Stx16 ENSMUSG00000027522

Description

syntaxin 16 [Source:MGI Symbol;Acc:MGI:1923396]

Gene Synonyms

5430410K23Rik, 6330500A18Rik, SYN16

Location

Chromosome 2: 173,918,101-173,941,564 forward strand.

GRCm39:CM000995.3

About this gene

This gene has 5 transcripts (splice variants), 199 orthologues, 12 paralogues and is associated with 29 phenotypes.

Transcripts

Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	Flags
ENSMUST00000087908.10	Stx16-201	3865	326aa	ENSMUSP00000085218.4	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS17147	Q8BVI5	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, GENCODE Primary represents a minimal set that contains MANE Select, MANE Plus Clinical and Ensembl Canonical transcripts and transcripts containing any conserved exons and common alternative splicing events (including exons skips) that are absent from the MANE and Ensembl Canonical transcripts for protein-coding genes. Other biotypes will have the GENCODE Primary flag added to the Ensembl Canonical transcript and for lncRNA genes only this will be the transcripts with the longest genomic span.GENCODE Primary, A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic, APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1, TSL 1: A transcript where all splice junctions are supported by at least one non-suspect mRNA. The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:1,
ENSMUST00000156054.2	Stx16-205	773	258aa	ENSMUSP00000116618.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding		F7CJY7	TSL 3: A transcript where the only support is from a single EST The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:3, 5' and 3' truncations in transcript evidence prevent annotation of the start and the end of the CDS.CDS 5' and 3' incomplete,
ENSMUST00000147038.8	Stx16-203	647	164aa	ENSMUSP00000120279.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding		B7ZCB8	TSL 5: A transcript where no single transcript supports the model structure. The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:5, 3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENSMUST00000155000.8	Stx16-204	356	88aa	ENSMUSP00000119952.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding		B7ZCB9	TSL 5: A transcript where no single transcript supports the model structure. The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:5, 3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENSMUST00000134876.8	Stx16-202	235	33aa	ENSMUSP00000123275.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding		B7ZCB7	TSL 5: A transcript where no single transcript supports the model structure. The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:5, 3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,