Gene: Casp1 ENSMUSG00000025888

Description

caspase 1 [Source:MGI Symbol;Acc:MGI:96544]

Gene Synonyms

Caspase-1, ICE, Il1bc, interleukin 1 beta-converting enzyme

Location

Chromosome 9: 5,298,508-5,307,290 forward strand.

GRCm39:CM001002.3

About this gene

This gene has 5 transcripts (splice variants), 450 orthologues, 11 paralogues and is associated with 2 phenotypes.

Transcripts

Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	Flags
ENSMUST00000027015.7	Casp1-201	1531	402aa	ENSMUSP00000027015.6	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS22798	P29452	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, GENCODE Primary represents a minimal set that contains MANE Select, MANE Plus Clinical and Ensembl Canonical transcripts and transcripts containing any conserved exons and common alternative splicing events (including exons skips) that are absent from the MANE and Ensembl Canonical transcripts for protein-coding genes. Other biotypes will have the GENCODE Primary flag added to the Ensembl Canonical transcript and for lncRNA genes only this will be the transcripts with the longest genomic span.GENCODE Primary, A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic, APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1, TSL 1: A transcript where all splice junctions are supported by at least one non-suspect mRNA. The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:1,
ENSMUST00000238505.2	Casp1-203	702	156aa	ENSMUSP00000158737.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding		A0A571BDI1	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENSMUST00000238730.2	Casp1-205	641	103aa	ENSMUSP00000158725.2	Nonsense mediated decay		A0A571BF22	5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete,
ENSMUST00000238546.2	Casp1-204	2221	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-
ENSMUST00000238348.2	Casp1-202	2216	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-

Strains

More views of comparative genomics data, such as multiple alignments and synteny, are available on the Location page for this gene.

Gene: Casp1 ENSMUSG00000025888

Strains

About Us

Get help

Our sister sites

Follow us

Favourite species

All species

Recent locations

Gene: Casp1 ENSMUSG00000025888

Strains

About Us

Get help

Our sister sites

Follow us