Gene: Hmgxb3 ENSMUSG00000024622

Description

HMG box domain containing 3 [Source:MGI Symbol;Acc:MGI:2441817]

Gene Synonyms

2510002C16Rik, A630042L21Rik

Location

Chromosome 18: 61,264,349-61,310,122 reverse strand.

GRCm39:CM001011.3

About this gene

This gene has 9 transcripts (splice variants), 200 orthologues and is associated with 16 phenotypes.

Transcripts

Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	Flags
ENSMUST00000235480.2	Hmgxb3-203	5131	1286aa	ENSMUSP00000158376.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding		Q6AXF8	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, GENCODE Primary represents a minimal set that contains MANE Select, MANE Plus Clinical and Ensembl Canonical transcripts and transcripts containing any conserved exons and common alternative splicing events (including exons skips) that are absent from the MANE and Ensembl Canonical transcripts for protein-coding genes. Other biotypes will have the GENCODE Primary flag added to the Ensembl Canonical transcript and for lncRNA genes only this will be the transcripts with the longest genomic span.GENCODE Primary, A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic, APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,
ENSMUST00000091884.6	Hmgxb3-201	5103	1254aa	ENSMUSP00000089498.5	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS50301	G3X9M3	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic, APPRIS P2: Where the APPRIS core modules are unable to choose a clear principal variant (approximately 25% of human protein coding genes), the database chooses two or more of the CDS variants as "candidates" to be the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P2, TSL 1: A transcript where all splice junctions are supported by at least one non-suspect mRNA. The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:1,
ENSMUST00000236068.2	Hmgxb3-205	4597	421aa	ENSMUSP00000157514.2	Nonsense mediated decay		A0A494B973	-
ENSMUST00000237101.2	Hmgxb3-206	776	184aa	ENSMUSP00000157699.2	Nonsense mediated decay		A0A494B9M0	5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete,
ENSMUST00000235236.2	Hmgxb3-202	4319	No protein	-	Alternatively spliced transcript of a protein coding gene for which we cannot define a CDS.Protein coding CDS not defined		-	-
ENSMUST00000237535.2	Hmgxb3-209	755	No protein	-	Alternatively spliced transcript of a protein coding gene for which we cannot define a CDS.Protein coding CDS not defined		-	-
ENSMUST00000237498.2	Hmgxb3-208	4179	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-
ENSMUST00000237443.2	Hmgxb3-207	3410	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-
ENSMUST00000235663.2	Hmgxb3-204	697	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-

Strains

More views of comparative genomics data, such as multiple alignments and synteny, are available on the Location page for this gene.

Gene: Hmgxb3 ENSMUSG00000024622

Strains

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Gene: Hmgxb3 ENSMUSG00000024622

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