Gene: Ndfip1 ENSMUSG00000024425

Description

Nedd4 family interacting protein 1 [Source:MGI Symbol;Acc:MGI:1929601]

Gene Synonyms

0610010M22Rik

Location

Chromosome 18: 38,543,449-38,598,356 forward strand.

GRCm39:CM001011.3

About this gene

This gene has 8 transcripts (splice variants), 280 orthologues, 1 paralogue and is associated with 21 phenotypes.

Transcripts

Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	Flags
ENSMUST00000236085.2	Ndfip1-204	1796	221aa	ENSMUSP00000158314.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS37789	Q8R0W6	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, GENCODE Primary represents a minimal set that contains MANE Select, MANE Plus Clinical and Ensembl Canonical transcripts and transcripts containing any conserved exons and common alternative splicing events (including exons skips) that are absent from the MANE and Ensembl Canonical transcripts for protein-coding genes. Other biotypes will have the GENCODE Primary flag added to the Ensembl Canonical transcript and for lncRNA genes only this will be the transcripts with the longest genomic span.GENCODE Primary, A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic, APPRIS P2: Where the APPRIS core modules are unable to choose a clear principal variant (approximately 25% of human protein coding genes), the database chooses two or more of the CDS variants as "candidates" to be the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P2,
ENSMUST00000236052.2	Ndfip1-203	1723	214aa	ENSMUSP00000157954.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding		A0A494BAA4	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic, APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,
ENSMUST00000025293.5	Ndfip1-201	1392	221aa	ENSMUSP00000025293.4	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS37789	Q8R0W6	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic, APPRIS P2: Where the APPRIS core modules are unable to choose a clear principal variant (approximately 25% of human protein coding genes), the database chooses two or more of the CDS variants as "candidates" to be the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P2, TSL 1: A transcript where all splice junctions are supported by at least one non-suspect mRNA. The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:1,
ENSMUST00000236171.2	Ndfip1-205	1237	164aa	ENSMUSP00000157630.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding		A0A494B9F5	5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete,
ENSMUST00000236480.2	Ndfip1-206	838	167aa	ENSMUSP00000158119.2	Nonsense mediated decay		A0A494BAK0	-
ENSMUST00000238135.2	Ndfip1-208	4364	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-
ENSMUST00000235458.2	Ndfip1-202	817	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-
ENSMUST00000236803.2	Ndfip1-207	729	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-

Strains

More views of comparative genomics data, such as multiple alignments and synteny, are available on the Location page for this gene.

Gene: Ndfip1 ENSMUSG00000024425

Strains

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Gene: Ndfip1 ENSMUSG00000024425

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