Gene: Lims2 ENSMUSG00000024395

Description

LIM and senescent cell antigen like domains 2 [Source:MGI Symbol;Acc:MGI:2385067]

Gene Synonyms

PINCH2

Location

Chromosome 18: 32,055,343-32,091,672 forward strand.

GRCm39:CM001011.3

About this gene

This gene has 12 transcripts (splice variants), 129 orthologues, 1 paralogue and is associated with 4 phenotypes.

Transcripts

Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	Flags
ENSMUST00000025254.9	Lims2-201	1870	341aa	ENSMUSP00000025254.8	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS29113	Q91XD2	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, GENCODE Primary represents a minimal set that contains MANE Select, MANE Plus Clinical and Ensembl Canonical transcripts and transcripts containing any conserved exons and common alternative splicing events (including exons skips) that are absent from the MANE and Ensembl Canonical transcripts for protein-coding genes. Other biotypes will have the GENCODE Primary flag added to the Ensembl Canonical transcript and for lncRNA genes only this will be the transcripts with the longest genomic span.GENCODE Primary, A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic, APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1, TSL 1: A transcript where all splice junctions are supported by at least one non-suspect mRNA. The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:1,
ENSMUST00000233994.2	Lims2-210	685	164aa	ENSMUSP00000157357.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding		A0A3Q4EC95	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENSMUST00000223753.2	Lims2-202	627	206aa	ENSMUSP00000153122.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding		A0A286YCS7	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENSMUST00000224383.2	Lims2-204	557	153aa	ENSMUSP00000152960.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding		A0A286YCF2	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENSMUST00000224328.2	Lims2-203	450	59aa	ENSMUSP00000153433.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding		A0A286YDH9	5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete,
ENSMUST00000225404.2	Lims2-207	805	37aa	ENSMUSP00000153218.2	Nonsense mediated decay		A0A286YD07	-
ENSMUST00000225125.2	Lims2-205	491	No protein	-	Alternatively spliced transcript of a protein coding gene for which we cannot define a CDS.Protein coding CDS not defined		-	-
ENSMUST00000225470.2	Lims2-208	436	No protein	-	Alternatively spliced transcript of a protein coding gene for which we cannot define a CDS.Protein coding CDS not defined		-	-
ENSMUST00000234549.2	Lims2-211	430	No protein	-	Alternatively spliced transcript of a protein coding gene for which we cannot define a CDS.Protein coding CDS not defined		-	-
ENSMUST00000234678.2	Lims2-212	410	No protein	-	Alternatively spliced transcript of a protein coding gene for which we cannot define a CDS.Protein coding CDS not defined		-	-
ENSMUST00000226112.2	Lims2-209	175	No protein	-	Alternatively spliced transcript of a protein coding gene for which we cannot define a CDS.Protein coding CDS not defined		-	-
ENSMUST00000225400.2	Lims2-206	415	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-