Gene: Srsf7 ENSMUSG00000024097

Description

serine and arginine-rich splicing factor 7 [Source:MGI Symbol;Acc:MGI:1926232]

Gene Synonyms

9430065L19Rik, 9G8, NX-96, Sfrs7

Location

Chromosome 17: 80,507,509-80,514,736 reverse strand.

GRCm39:CM001010.3

About this gene

This gene has 8 transcripts (splice variants), 214 orthologues, 8 paralogues and is associated with 5 phenotypes.

Transcripts

Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	Flags
ENSMUST00000063417.11	Srsf7-201	2288	238aa	ENSMUSP00000070983.10	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS28988	Q8BL97-2	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, GENCODE Primary represents a minimal set that contains MANE Select, MANE Plus Clinical and Ensembl Canonical transcripts and transcripts containing any conserved exons and common alternative splicing events (including exons skips) that are absent from the MANE and Ensembl Canonical transcripts for protein-coding genes. Other biotypes will have the GENCODE Primary flag added to the Ensembl Canonical transcript and for lncRNA genes only this will be the transcripts with the longest genomic span.GENCODE Primary, A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic, APPRIS P4: Where the APPRIS core modules are unable to choose a clear principal CDS and there is more than one variant with a distinct (but consecutive) CCDS identifiers, APPRIS selects the longest CCDS isoform as the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P4, TSL 1: A transcript where all splice junctions are supported by at least one non-suspect mRNA. The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:1,
ENSMUST00000234095.2	Srsf7-202	2403	154aa	ENSMUSP00000157284.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding		A0A3Q4EGP0	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENSMUST00000235069.2	Srsf7-208	1040	235aa	ENSMUSP00000157383.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding		A0A3Q4L393	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic, APPRIS ALT1: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that is conserved in at least three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT1,
ENSMUST00000234696.2	Srsf7-205	987	215aa	ENSMUSP00000157263.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding		A0A3Q4L335	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENSMUST00000234503.2	Srsf7-203	1991	137aa	ENSMUSP00000157265.2	Nonsense mediated decay		A0A3Q4EH04	-
ENSMUST00000235036.2	Srsf7-207	1921	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-
ENSMUST00000234889.2	Srsf7-206	1898	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-
ENSMUST00000234577.2	Srsf7-204	839	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-

Strains

More views of comparative genomics data, such as multiple alignments and synteny, are available on the Location page for this gene.

Gene: Srsf7 ENSMUSG00000024097

Strains

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Gene: Srsf7 ENSMUSG00000024097

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