Gene: Ifnar1 ENSMUSG00000022967

Description

interferon (alpha and beta) receptor 1 [Source:MGI Symbol;Acc:MGI:107658]

Gene Synonyms

IFN-alpha/betaR, Ifar, Ifrc

Location

Chromosome 16: 91,282,126-91,304,329 forward strand.

GRCm39:CM001009.3

About this gene

This gene has 8 transcripts (splice variants), 225 orthologues, 11 paralogues and is associated with 61 phenotypes.

Transcripts

Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	Flags
ENSMUST00000023689.11	Ifnar1-201	3909	590aa	ENSMUSP00000023689.5	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS28326	P33896	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, GENCODE Primary represents a minimal set that contains MANE Select, MANE Plus Clinical and Ensembl Canonical transcripts and transcripts containing any conserved exons and common alternative splicing events (including exons skips) that are absent from the MANE and Ensembl Canonical transcripts for protein-coding genes. Other biotypes will have the GENCODE Primary flag added to the Ensembl Canonical transcript and for lncRNA genes only this will be the transcripts with the longest genomic span.GENCODE Primary, A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic, APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1, TSL 1: A transcript where all splice junctions are supported by at least one non-suspect mRNA. The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:1,
ENSMUST00000117748.8	Ifnar1-202	2771	590aa	ENSMUSP00000112670.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS28326	P33896	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic, APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1, TSL 1: A transcript where all splice junctions are supported by at least one non-suspect mRNA. The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:1,
ENSMUST00000129878.2	Ifnar1-204	415	135aa	ENSMUSP00000120945.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding		E9PWM1	TSL 5: A transcript where no single transcript supports the model structure. The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:5, 3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENSMUST00000123196.9	Ifnar1-203	3433	283aa	ENSMUSP00000119160.3	Nonsense mediated decay		A0A384DVB8	TSL 5: A transcript where no single transcript supports the model structure. The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:5,
ENSMUST00000232509.2	Ifnar1-208	552	77aa	ENSMUSP00000156101.2	Nonsense mediated decay		A0A338P6T9	-
ENSMUST00000232453.2	Ifnar1-207	468	35aa	ENSMUSP00000156150.2	Nonsense mediated decay		A0A338P6X7	5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete,
ENSMUST00000231604.2	Ifnar1-206	543	No protein	-	Alternatively spliced transcript of a protein coding gene for which we cannot define a CDS.Protein coding CDS not defined		-	-
ENSMUST00000145008.2	Ifnar1-205	2234	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	TSL 2: A transcript where the best supporting mRNA is flagged as suspect or the support is from multiple ESTs The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:2,

Strains

More views of comparative genomics data, such as multiple alignments and synteny, are available on the Location page for this gene.

Gene: Ifnar1 ENSMUSG00000022967

Strains

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Gene: Ifnar1 ENSMUSG00000022967

Strains

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