Gene: Gart ENSMUSG00000022962

Description

phosphoribosylglycinamide formyltransferase [Source:MGI Symbol;Acc:MGI:95654]

Gene Synonyms

Gaps, Prgs

Location

Chromosome 16: 91,418,074-91,443,840 reverse strand.

GRCm39:CM001009.3

About this gene

This gene has 13 transcripts (splice variants), 216 orthologues and is associated with 6 phenotypes.

Transcripts

Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	Flags
ENSMUST00000023684.14	Gart-201	3518	1010aa	ENSMUSP00000023684.8	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS28329	Q64737-1	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, GENCODE Primary represents a minimal set that contains MANE Select, MANE Plus Clinical and Ensembl Canonical transcripts and transcripts containing any conserved exons and common alternative splicing events (including exons skips) that are absent from the MANE and Ensembl Canonical transcripts for protein-coding genes. Other biotypes will have the GENCODE Primary flag added to the Ensembl Canonical transcript and for lncRNA genes only this will be the transcripts with the longest genomic span.GENCODE Primary, A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic, APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1, TSL 1: A transcript where all splice junctions are supported by at least one non-suspect mRNA. The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:1,
ENSMUST00000232289.2	Gart-209	3276	1010aa	ENSMUSP00000156002.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS28329	Q64737-1	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic, APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1,
ENSMUST00000120450.2	Gart-202	1865	433aa	ENSMUSP00000114034.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding		Q64737-2	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic, TSL 1: A transcript where all splice junctions are supported by at least one non-suspect mRNA. The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:1,
ENSMUST00000231380.2	Gart-204	1852	433aa	ENSMUSP00000156232.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding		Q64737-2	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENSMUST00000232367.2	Gart-210	837	199aa	ENSMUSP00000156142.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding		A0A338P6X4	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENSMUST00000232643.2	Gart-213	582	82aa	ENSMUSP00000156130.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding		A0A338P6W0	5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete,
ENSMUST00000232640.2	Gart-212	453	99aa	ENSMUSP00000155957.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding		A0A338P6T2	5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete,
ENSMUST00000231444.2	Gart-205	439	64aa	ENSMUSP00000155865.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding		A0A338P676	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENSMUST00000156713.8	Gart-203	3246	306aa	ENSMUSP00000119272.2	Nonsense mediated decay		D6RCG1	TSL 5: A transcript where no single transcript supports the model structure. The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:5,
ENSMUST00000231702.2	Gart-206	842	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-
ENSMUST00000232620.2	Gart-211	503	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-
ENSMUST00000231863.2	Gart-208	455	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-
ENSMUST00000231775.2	Gart-207	443	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-