Summary
- Splice variants
- Transcript comparison
- Gene alleles
Sequence
- Secondary Structure
Comparative Genomics
Ontologies
- GO: Anatomical entity
Phenotypes
Genetic Variation
Gene expression
Pathway
Molecular interactions
Regulation
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- Gene history

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Gene: Naga ENSMUSG00000022453

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Description

N-acetyl galactosaminidase, alpha [Source:MGI Symbol;Acc:MGI:1261422]

Location

Chromosome 15: 82,213,733-82,223,126 reverse strand.

GRCm39:CM001008.3

About this gene

This gene has 10 transcripts (splice variants), 234 orthologues, 1 paralogue and is associated with 2 phenotypes.

Transcripts

Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	Flags
ENSMUST00000023088.8	Naga-201	1913	415aa	ENSMUSP00000023088.8	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS27686	Q9QWR8	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, GENCODE Primary represents a minimal set that contains MANE Select, MANE Plus Clinical and Ensembl Canonical transcripts and transcripts containing any conserved exons and common alternative splicing events (including exons skips) that are absent from the MANE and Ensembl Canonical transcripts for protein-coding genes. Other biotypes will have the GENCODE Primary flag added to the Ensembl Canonical transcript and for lncRNA genes only this will be the transcripts with the longest genomic span.GENCODE Primary, A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic, APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1, TSL 1: A transcript where all splice junctions are supported by at least one non-suspect mRNA. The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:1,
ENSMUST00000230380.2	Naga-209	1020	284aa	ENSMUSP00000155062.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding		Q3UZX5	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENSMUST00000229388.2	Naga-203	833	218aa	ENSMUSP00000155110.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding		A0A2R8VHH9	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENSMUST00000229294.2	Naga-202	816	237aa	ENSMUSP00000154927.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding		A0A2R8VHC0	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENSMUST00000229733.2	Naga-204	500	99aa	ENSMUSP00000155238.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding		A0A2R8VK50	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENSMUST00000230269.2	Naga-208	403	92aa	ENSMUSP00000155445.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding		A0A2R8VHU7	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENSMUST00000229948.2	Naga-205	704	56aa	ENSMUSP00000155159.2	Nonsense mediated decay		A0A2R8VHJ3	-
ENSMUST00000230139.2	Naga-206	548	57aa	ENSMUSP00000155808.2	Nonsense mediated decay		A0A2R8W742	5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete,
ENSMUST00000230664.2	Naga-210	804	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-
ENSMUST00000230268.2	Naga-207	789	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-

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Strains

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Genomic alignments

Gene tree

Orthologues

Paralogues

Families (Not available)

More views of comparative genomics data, such as multiple alignments and synteny, are available on the Location page for this gene.

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Personal Data