Gene: Retreg1 ENSMUSG00000022270

Description

reticulophagy regulator 1 [Source:MGI Symbol;Acc:MGI:1913520]

Gene Synonyms

1810015C04Rik, Fam134b

Location

Chromosome 15: 25,843,266-25,973,773 forward strand.

GRCm39:CM001008.3

About this gene

This gene has 8 transcripts (splice variants), 123 orthologues and is associated with 7 phenotypes.

Transcripts

Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	Flags
ENSMUST00000022881.15	Retreg1-201	3248	480aa	ENSMUSP00000022881.8	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS37050	Q8VE91-4	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, GENCODE Primary represents a minimal set that contains MANE Select, MANE Plus Clinical and Ensembl Canonical transcripts and transcripts containing any conserved exons and common alternative splicing events (including exons skips) that are absent from the MANE and Ensembl Canonical transcripts for protein-coding genes. Other biotypes will have the GENCODE Primary flag added to the Ensembl Canonical transcript and for lncRNA genes only this will be the transcripts with the longest genomic span.GENCODE Primary, A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic, TSL 5: A transcript where no single transcript supports the model structure. The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:5,
ENSMUST00000227275.2	Retreg1-205	3200	356aa	ENSMUSP00000154471.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS37051	Q8VE91-2	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic, APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1,
ENSMUST00000226438.2	Retreg1-203	2783	364aa	ENSMUSP00000154765.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding		Q8VE91-1	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENSMUST00000110438.3	Retreg1-202	1526	356aa	ENSMUSP00000106068.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS37051	Q8VE91-2	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic, APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1, TSL 1: A transcript where all splice junctions are supported by at least one non-suspect mRNA. The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:1,
ENSMUST00000228306.2	Retreg1-206	1430	346aa	ENSMUSP00000154070.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding		Q8VE91-3	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENSMUST00000228327.2	Retreg1-207	579	145aa	ENSMUSP00000154377.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding		A0A2I3BQZ7	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENSMUST00000226750.2	Retreg1-204	484	54aa	ENSMUSP00000154791.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding		A0A2I3BS06	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENSMUST00000228600.2	Retreg1-208	361	40aa	ENSMUSP00000154407.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding		A0A2I3BR09	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,