Gene: Tgm1 ENSMUSG00000022218

Description

transglutaminase 1, K polypeptide [Source:MGI Symbol;Acc:MGI:98730]

Gene Synonyms

2310004J08Rik, K polypeptide, TG K, TGase 1, TGase1, protein-glutamine-gamma-glutamyltransferase

Location

Chromosome 14: 55,937,466-55,951,383 reverse strand.

GRCm39:CM001007.3

About this gene

This gene has 6 transcripts (splice variants), 308 orthologues, 8 paralogues and is associated with 13 phenotypes.

Transcripts

Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	Flags
ENSMUST00000168729.8	Tgm1-202	2852	815aa	ENSMUSP00000128090.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS36932	A0A0R4J293	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, GENCODE Primary represents a minimal set that contains MANE Select, MANE Plus Clinical and Ensembl Canonical transcripts and transcripts containing any conserved exons and common alternative splicing events (including exons skips) that are absent from the MANE and Ensembl Canonical transcripts for protein-coding genes. Other biotypes will have the GENCODE Primary flag added to the Ensembl Canonical transcript and for lncRNA genes only this will be the transcripts with the longest genomic span.GENCODE Primary, A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic, APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1, TSL 5: A transcript where no single transcript supports the model structure. The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:5,
ENSMUST00000002389.9	Tgm1-201	2791	815aa	ENSMUSP00000002389.8	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS36932	A0A0R4J293	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic, APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1, TSL 1: A transcript where all splice junctions are supported by at least one non-suspect mRNA. The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:1,
ENSMUST00000178034.9	Tgm1-203	2730	815aa	ENSMUSP00000137642.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS36932	A0A0R4J293	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic, APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1, TSL 1: A transcript where all splice junctions are supported by at least one non-suspect mRNA. The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:1,
ENSMUST00000227958.2	Tgm1-205	652	164aa	ENSMUSP00000154784.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding		A0A2I3BS02	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENSMUST00000226907.2	Tgm1-204	605	167aa	ENSMUSP00000154239.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding		A0A2I3BQN2	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENSMUST00000228123.2	Tgm1-206	558	116aa	ENSMUSP00000154744.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding		A0A2I3BRW9	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,

Strains

More views of comparative genomics data, such as multiple alignments and synteny, are available on the Location page for this gene.

Gene: Tgm1 ENSMUSG00000022218

Strains

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Gene: Tgm1 ENSMUSG00000022218

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