Gene: Rnf180 ENSMUSG00000021720

Description

ring finger protein 180 [Source:MGI Symbol;Acc:MGI:1919066]

Gene Synonyms

3110001E11Rik, Rines

Location

Chromosome 13: 105,266,509-105,431,323 reverse strand.

GRCm39:CM001006.3

About this gene

This gene has 5 transcripts (splice variants), 195 orthologues, 5 paralogues and is associated with 20 phenotypes.

Transcripts

Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	Flags
ENSMUST00000224662.2	Rnf180-203	2734	592aa	ENSMUSP00000153506.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding		Q3U827-1	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, GENCODE Primary represents a minimal set that contains MANE Select, MANE Plus Clinical and Ensembl Canonical transcripts and transcripts containing any conserved exons and common alternative splicing events (including exons skips) that are absent from the MANE and Ensembl Canonical transcripts for protein-coding genes. Other biotypes will have the GENCODE Primary flag added to the Ensembl Canonical transcript and for lncRNA genes only this will be the transcripts with the longest genomic span.GENCODE Primary, A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic, APPRIS P4: Where the APPRIS core modules are unable to choose a clear principal CDS and there is more than one variant with a distinct (but consecutive) CCDS identifiers, APPRIS selects the longest CCDS isoform as the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P4,
ENSMUST00000224011.2	Rnf180-202	3785	575aa	ENSMUSP00000153678.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS36775	Q3U827-3	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENSMUST00000226044.2	Rnf180-205	3279	591aa	ENSMUSP00000153478.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding		Q3U827-2	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic, APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,
ENSMUST00000069686.7	Rnf180-201	1728	575aa	ENSMUSP00000064624.7	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS36775	Q3U827-3	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic, TSL 5: A transcript where no single transcript supports the model structure. The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:5,
ENSMUST00000224749.2	Rnf180-204	1017	317aa	ENSMUSP00000153051.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding		A0A286YCL6	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,

Strains

More views of comparative genomics data, such as multiple alignments and synteny, are available on the Location page for this gene.

Gene: Rnf180 ENSMUSG00000021720

Strains

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Gene: Rnf180 ENSMUSG00000021720

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