Gene: Hnf1b ENSMUSG00000020679

Description

HNF1 homeobox B [Source:MGI Symbol;Acc:MGI:98505]

Gene Synonyms

HNF-1Beta, Hnf1beta, LFB3, Tcf-2, Tcf2, hepatocyte nuclear factor-1 beta, vHNF1

Location

Chromosome 11: 83,740,889-83,796,645 forward strand.

GRCm39:CM001004.3

About this gene

This gene has 5 transcripts (splice variants), 218 orthologues, 1 paralogue and is associated with 35 phenotypes.

Transcripts

Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	Flags
ENSMUST00000108114.9	Hnf1b-203	2659	532aa	ENSMUSP00000103749.3	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS70271	P27889-2	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, GENCODE Primary represents a minimal set that contains MANE Select, MANE Plus Clinical and Ensembl Canonical transcripts and transcripts containing any conserved exons and common alternative splicing events (including exons skips) that are absent from the MANE and Ensembl Canonical transcripts for protein-coding genes. Other biotypes will have the GENCODE Primary flag added to the Ensembl Canonical transcript and for lncRNA genes only this will be the transcripts with the longest genomic span.GENCODE Primary, A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic, APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1, TSL 1: A transcript where all splice junctions are supported by at least one non-suspect mRNA. The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:1,
ENSMUST00000021016.10	Hnf1b-201	2759	558aa	ENSMUSP00000021016.3	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS25179	P27889-1	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic, TSL 1: A transcript where all splice junctions are supported by at least one non-suspect mRNA. The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:1,
ENSMUST00000108113.3	Hnf1b-202	2376	435aa	ENSMUSP00000103748.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS70272	P27889-3	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic, TSL 1: A transcript where all splice junctions are supported by at least one non-suspect mRNA. The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:1,
ENSMUST00000135975.3	Hnf1b-204	763	56aa	ENSMUSP00000117036.4	Gene/transcipt that contains an open reading frame (ORF).Protein coding		A0A0A0MQH4	TSL 3: A transcript where the only support is from a single EST The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:3, 3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENSMUST00000146786.8	Hnf1b-205	671	199aa	ENSMUSP00000123297.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding		F6XBL0	TSL 3: A transcript where the only support is from a single EST The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:3, 3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,

Strains

More views of comparative genomics data, such as multiple alignments and synteny, are available on the Location page for this gene.

Gene: Hnf1b ENSMUSG00000020679

Strains

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Gene: Hnf1b ENSMUSG00000020679

Strains

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