Gene: Vps26a ENSMUSG00000020078

Description

VPS26 retromer complex component A [Source:MGI Symbol;Acc:MGI:1353654]

Gene Synonyms

H beta 58, HB58, Vps26

Location

Chromosome 10: 62,291,014-62,322,584 reverse strand.

GRCm39:CM001003.3

About this gene

This gene has 4 transcripts (splice variants), 227 orthologues, 2 paralogues and is associated with 8 phenotypes.

Transcripts

Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	Flags
ENSMUST00000105447.11	Vps26a-202	2597	327aa	ENSMUSP00000101087.4	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS35921	P40336-1	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, GENCODE Primary represents a minimal set that contains MANE Select, MANE Plus Clinical and Ensembl Canonical transcripts and transcripts containing any conserved exons and common alternative splicing events (including exons skips) that are absent from the MANE and Ensembl Canonical transcripts for protein-coding genes. Other biotypes will have the GENCODE Primary flag added to the Ensembl Canonical transcript and for lncRNA genes only this will be the transcripts with the longest genomic span.GENCODE Primary, A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic, APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1, TSL 1: A transcript where all splice junctions are supported by at least one non-suspect mRNA. The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:1,
ENSMUST00000092473.5	Vps26a-201	2712	359aa	ENSMUSP00000090130.4	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS48579	P40336-2	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic, TSL 1: A transcript where all splice junctions are supported by at least one non-suspect mRNA. The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:1,
ENSMUST00000217868.2	Vps26a-203	456	123aa	ENSMUSP00000151888.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding		A0A1W2P7Z9	TSL 2: A transcript where the best supporting mRNA is flagged as suspect or the support is from multiple ESTs The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:2, 3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENSMUST00000219574.2	Vps26a-204	2288	63aa	ENSMUSP00000151774.2	Nonsense mediated decay		A0A1W2P7R7	TSL 1: A transcript where all splice junctions are supported by at least one non-suspect mRNA. The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:1,

Strains

More views of comparative genomics data, such as multiple alignments and synteny, are available on the Location page for this gene.

Gene: Vps26a ENSMUSG00000020078

Strains

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Gene: Vps26a ENSMUSG00000020078

Strains

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