Summary
- Splice variants
- Transcript comparison
- Gene alleles
Sequence
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Comparative Genomics
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Ontologies
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Phenotypes
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Gene: Mrpl49 ENSMUSG00000007338

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Description

mitochondrial ribosomal protein L49 [Source:MGI Symbol;Acc:MGI:108180]

Gene Synonyms

4833419D18Rik, Nof1

Location

Chromosome 19: 6,103,652-6,107,815 reverse strand.

GRCm39:CM001012.3

About this gene

This gene has 4 transcripts (splice variants) and 192 orthologues.

Transcripts

Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	Flags
ENSMUST00000007482.8	Mrpl49-201	1764	166aa	ENSMUSP00000007482.7	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS29488	Q9CQ40	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, GENCODE Primary represents a minimal set that contains MANE Select, MANE Plus Clinical and Ensembl Canonical transcripts and transcripts containing any conserved exons and common alternative splicing events (including exons skips) that are absent from the MANE and Ensembl Canonical transcripts for protein-coding genes. Other biotypes will have the GENCODE Primary flag added to the Ensembl Canonical transcript and for lncRNA genes only this will be the transcripts with the longest genomic span.GENCODE Primary, A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic, APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1, TSL 1: A transcript where all splice junctions are supported by at least one non-suspect mRNA. The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:1,
ENSMUST00000235520.2	Mrpl49-202	1311	56aa	ENSMUSP00000157535.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding		A0A494B993	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENSMUST00000236412.2	Mrpl49-203	421	115aa	ENSMUSP00000157635.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding		A0A494B9G1	5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete,
ENSMUST00000236833.2	Mrpl49-204	146	No protein	-	Alternatively spliced transcript of a protein coding gene for which we cannot define a CDS.Protein coding CDS not defined		-	-

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Strains

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Genomic alignments

Gene tree

Orthologues

Paralogues (Not available)

Families (Not available)

More views of comparative genomics data, such as multiple alignments and synteny, are available on the Location page for this gene.

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