Gene: Sod2 ENSMUSG00000006818

Description

superoxide dismutase 2, mitochondrial [Source:MGI Symbol;Acc:MGI:98352]

Gene Synonyms

MnSOD, Sod-2, manganese SOD, manganese superoxide dismutase

Location

Chromosome 17: 13,225,733-13,258,950 forward strand.

GRCm39:CM001010.3

About this gene

This gene has 8 transcripts (splice variants), 205 orthologues and is associated with 101 phenotypes.

Transcripts

Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	Flags
ENSMUST00000007012.6	Sod2-201	5861	222aa	ENSMUSP00000007012.5	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS28399	P09671 Q4FJX9	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, GENCODE Primary represents a minimal set that contains MANE Select, MANE Plus Clinical and Ensembl Canonical transcripts and transcripts containing any conserved exons and common alternative splicing events (including exons skips) that are absent from the MANE and Ensembl Canonical transcripts for protein-coding genes. Other biotypes will have the GENCODE Primary flag added to the Ensembl Canonical transcript and for lncRNA genes only this will be the transcripts with the longest genomic span.GENCODE Primary, A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic, APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1, TSL 1: A transcript where all splice junctions are supported by at least one non-suspect mRNA. The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:1,
ENSMUST00000233451.2	Sod2-205	451	50aa	ENSMUSP00000156792.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding		A0A3B2W479	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENSMUST00000232726.2	Sod2-202	4057	182aa	ENSMUSP00000156844.2	Nonsense mediated decay		A0A3B2WBF0	-
ENSMUST00000233897.2	Sod2-207	1138	No protein	-	Alternatively spliced transcript of a protein coding gene for which we cannot define a CDS.Protein coding CDS not defined		-	-
ENSMUST00000233922.2	Sod2-208	804	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-
ENSMUST00000233333.2	Sod2-204	644	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-
ENSMUST00000233791.2	Sod2-206	584	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-
ENSMUST00000233278.2	Sod2-203	334	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-