Gene: Fbxo11 ENSMUSG00000005371

Description

F-box protein 11 [Source:MGI Symbol;Acc:MGI:2147134]

Gene Synonyms

GENA 104, Jf

Location

Chromosome 17: 88,298,287-88,372,719 reverse strand.

GRCm39:CM001010.3

About this gene

This gene has 6 transcripts (splice variants), 135 orthologues, 1 paralogue and is associated with 65 phenotypes.

Transcripts

Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	Flags
ENSMUST00000130379.9	Fbxo11-203	3753	842aa	ENSMUSP00000121206.3	Gene/transcipt that contains an open reading frame (ORF).Protein coding		Q7TPD1-3	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, GENCODE Primary represents a minimal set that contains MANE Select, MANE Plus Clinical and Ensembl Canonical transcripts and transcripts containing any conserved exons and common alternative splicing events (including exons skips) that are absent from the MANE and Ensembl Canonical transcripts for protein-coding genes. Other biotypes will have the GENCODE Primary flag added to the Ensembl Canonical transcript and for lncRNA genes only this will be the transcripts with the longest genomic span.GENCODE Primary, A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic, APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1, TSL 1: A transcript where all splice junctions are supported by at least one non-suspect mRNA. The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:1,
ENSMUST00000005504.15	Fbxo11-201	4019	930aa	ENSMUSP00000005504.9	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS37717	Q7TPD1-1	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic, TSL 5: A transcript where no single transcript supports the model structure. The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:5,
ENSMUST00000235112.2	Fbxo11-206	2657	842aa	ENSMUSP00000157024.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding		Q7TPD1-3	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic, APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1,
ENSMUST00000235056.2	Fbxo11-205	371	33aa	ENSMUSP00000157142.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding		A0A3Q4EBZ2	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENSMUST00000135639.8	Fbxo11-204	2022	137aa	ENSMUSP00000138653.2	Nonsense mediated decay		S4R2I0	TSL 5: A transcript where no single transcript supports the model structure. The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:5, 5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete,
ENSMUST00000127334.2	Fbxo11-202	889	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	TSL 5: A transcript where no single transcript supports the model structure. The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:5,

Strains

More views of comparative genomics data, such as multiple alignments and synteny, are available on the Location page for this gene.

Gene: Fbxo11 ENSMUSG00000005371

Strains

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Gene: Fbxo11 ENSMUSG00000005371

Strains

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