Gene: Mapk13 ENSMUSG00000004864

Description

mitogen-activated protein kinase 13 [Source:MGI Symbol;Acc:MGI:1346864]

Gene Synonyms

SAPK4, Serk4, p38 delta MAP kinase

Location

Chromosome 17: 28,988,271-28,999,207 forward strand.

GRCm39:CM001010.3

About this gene

This gene has 9 transcripts (splice variants), 211 orthologues, 19 paralogues and is associated with 10 phenotypes.

Transcripts

Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	Flags
ENSMUST00000233984.2	Mapk13-209	2937	366aa	ENSMUSP00000156387.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS28584	Q3UIB2 Q9Z1B7	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, GENCODE Primary represents a minimal set that contains MANE Select, MANE Plus Clinical and Ensembl Canonical transcripts and transcripts containing any conserved exons and common alternative splicing events (including exons skips) that are absent from the MANE and Ensembl Canonical transcripts for protein-coding genes. Other biotypes will have the GENCODE Primary flag added to the Ensembl Canonical transcript and for lncRNA genes only this will be the transcripts with the longest genomic span.GENCODE Primary, A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic, APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1,
ENSMUST00000004986.14	Mapk13-201	1526	308aa	ENSMUSP00000004986.8	Gene/transcipt that contains an open reading frame (ORF).Protein coding		A0A3F2YNL4	TSL 1: A transcript where all splice junctions are supported by at least one non-suspect mRNA. The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:1, 5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete,
ENSMUST00000233109.2	Mapk13-206	825	266aa	ENSMUSP00000156487.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding		A0A3B2WAS4	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENSMUST00000233460.2	Mapk13-207	621	186aa	ENSMUSP00000156486.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding		A0A3B2W3M0	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENSMUST00000129096.3	Mapk13-203	1830	257aa	ENSMUSP00000115659.2	Nonsense mediated decay		D6RG58	TSL 5: A transcript where no single transcript supports the model structure. The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:5,
ENSMUST00000233676.2	Mapk13-208	1127	227aa	ENSMUSP00000156787.2	Nonsense mediated decay		A0A3B2WBB9	-
ENSMUST00000233051.2	Mapk13-205	864	40aa	ENSMUSP00000156822.2	Nonsense mediated decay		A0A3B2WBD8	-
ENSMUST00000133786.3	Mapk13-204	815	62aa	ENSMUSP00000156911.2	Nonsense mediated decay		A0A3B2WDA4	TSL 3: A transcript where the only support is from a single EST The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:3,
ENSMUST00000124099.8	Mapk13-202	1177	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	TSL 5: A transcript where no single transcript supports the model structure. The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:5,