Gene: Pax2 ENSMUSG00000004231

Description

paired box 2 [Source:MGI Symbol;Acc:MGI:97486]

Gene Synonyms

Opdc, Pax-2

Location

Chromosome 19: 44,735,057-44,826,310 forward strand.

GRCm39:CM001012.3

About this gene

This gene has 8 transcripts (splice variants), 253 orthologues, 47 paralogues and is associated with 125 phenotypes.

Transcripts

Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	Flags
ENSMUST00000174490.9	Pax2-203	4358	394aa	ENSMUSP00000134661.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS37998	A0A0R4J267	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, GENCODE Primary represents a minimal set that contains MANE Select, MANE Plus Clinical and Ensembl Canonical transcripts and transcripts containing any conserved exons and common alternative splicing events (including exons skips) that are absent from the MANE and Ensembl Canonical transcripts for protein-coding genes. Other biotypes will have the GENCODE Primary flag added to the Ensembl Canonical transcript and for lncRNA genes only this will be the transcripts with the longest genomic span.GENCODE Primary, A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic, APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1, TSL 1: A transcript where all splice junctions are supported by at least one non-suspect mRNA. The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:1,
ENSMUST00000004340.12	Pax2-201	3413	416aa	ENSMUSP00000004340.5	Gene/transcipt that contains an open reading frame (ORF).Protein coding		G3X8Q7	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic, TSL 5: A transcript where no single transcript supports the model structure. The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:5,
ENSMUST00000173346.5	Pax2-202	2078	390aa	ENSMUSP00000134311.3	Gene/transcipt that contains an open reading frame (ORF).Protein coding		G3UZ20	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic, TSL 5: A transcript where no single transcript supports the model structure. The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:5,
ENSMUST00000249925.1	Pax2-204	1893	425aa	ENSMUSP00000160022.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		A0AAQ4VMW4	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENSMUST00000249926.1	Pax2-205	1287	338aa	ENSMUSP00000160023.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		A0AAQ4VMW5	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENSMUST00000249929.1	Pax2-208	2121	No protein	-	Alternatively spliced transcript of a protein coding gene for which we cannot define a CDS.Protein coding CDS not defined		-	-
ENSMUST00000249928.1	Pax2-207	2008	No protein	-	Alternatively spliced transcript of a protein coding gene for which we cannot define a CDS.Protein coding CDS not defined		-	-
ENSMUST00000249927.1	Pax2-206	766	No protein	-	Alternatively spliced transcript of a protein coding gene for which we cannot define a CDS.Protein coding CDS not defined		-	-

Strains

More views of comparative genomics data, such as multiple alignments and synteny, are available on the Location page for this gene.

Gene: Pax2 ENSMUSG00000004231

Strains

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Gene: Pax2 ENSMUSG00000004231

Strains

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